Hb_000011_400

Information

Type transcription factor
Description TF Family: ERF
Location Contig11: 432952-436294
Sequence    

Annotation

kegg
ID rcu:RCOM_0043760
description Ethylene-responsive transcription factor, putative
nr
ID AGL34963.1
description ethylene-responsive transcription factor 4 [Hevea brasiliensis]
swissprot
ID Q9SSA8
description Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=1 SV=1
trembl
ID R4MUU9
description Ethylene-responsive transcription factor 4 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor rap2-12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03018: 432792-436120 , PASA_asmbl_03019: 432792-435985 , PASA_asmbl_03020: 432792-436120 , PASA_asmbl_03021: 432792-436316 , PASA_asmbl_03022: 432792-436316
cDNA
(Sanger)
(ID:Location)		 011_F23.ab1: 432792-435079

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_400 0.0 transcription factor TF Family: ERF ethylene-responsive transcription factor 4 [Hevea brasiliensis]
2 Hb_001123_320 0.0943347669 - - PREDICTED: uncharacterized protein LOC105647314 isoform X3 [Jatropha curcas]
3 Hb_009620_020 0.1160416042 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001840_090 0.1313858978 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
5 Hb_000363_210 0.1339496171 - - PREDICTED: putative MO25-like protein At5g47540 [Jatropha curcas]
6 Hb_000225_060 0.1347415374 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
7 Hb_003994_060 0.1352801462 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
8 Hb_000007_180 0.1365605267 - - hypothetical protein PRUPE_ppb024585mg, partial [Prunus persica]
9 Hb_002900_090 0.1377250337 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105646817 [Jatropha curcas]
10 Hb_005207_050 0.14000435 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 39 [Jatropha curcas]
11 Hb_000178_130 0.1435883775 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
12 Hb_002577_010 0.1437732359 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
13 Hb_003044_030 0.1466284116 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Cicer arietinum]
14 Hb_008643_200 0.1470221945 transcription factor TF Family: BES1 PREDICTED: BES1/BZR1 homolog protein 4 [Vitis vinifera]
15 Hb_004204_170 0.1480272697 - - synaptosomal associated protein, putative [Ricinus communis]
16 Hb_000787_020 0.1492381427 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_086639_010 0.149605158 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_001856_200 0.1498191726 - - Esterase PIR7B, putative [Ricinus communis]
19 Hb_000983_090 0.1504208381 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
20 Hb_000002_400 0.1509711243 transcription factor TF Family: Orphans PREDICTED: ethylene receptor 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000011_400 Hb_000011_400 Hb_001123_320 Hb_001123_320 Hb_000011_400--Hb_001123_320 Hb_009620_020 Hb_009620_020 Hb_000011_400--Hb_009620_020 Hb_001840_090 Hb_001840_090 Hb_000011_400--Hb_001840_090 Hb_000363_210 Hb_000363_210 Hb_000011_400--Hb_000363_210 Hb_000225_060 Hb_000225_060 Hb_000011_400--Hb_000225_060 Hb_003994_060 Hb_003994_060 Hb_000011_400--Hb_003994_060 Hb_010883_090 Hb_010883_090 Hb_001123_320--Hb_010883_090 Hb_006114_010 Hb_006114_010 Hb_001123_320--Hb_006114_010 Hb_001123_320--Hb_003994_060 Hb_000840_250 Hb_000840_250 Hb_001123_320--Hb_000840_250 Hb_000483_260 Hb_000483_260 Hb_001123_320--Hb_000483_260 Hb_000071_070 Hb_000071_070 Hb_009620_020--Hb_000071_070 Hb_009620_020--Hb_000225_060 Hb_009620_020--Hb_001123_320 Hb_020025_040 Hb_020025_040 Hb_009620_020--Hb_020025_040 Hb_009620_020--Hb_000483_260 Hb_002900_090 Hb_002900_090 Hb_001840_090--Hb_002900_090 Hb_005000_260 Hb_005000_260 Hb_001840_090--Hb_005000_260 Hb_006922_010 Hb_006922_010 Hb_001840_090--Hb_006922_010 Hb_000739_100 Hb_000739_100 Hb_001840_090--Hb_000739_100 Hb_145880_010 Hb_145880_010 Hb_001840_090--Hb_145880_010 Hb_003071_020 Hb_003071_020 Hb_001840_090--Hb_003071_020 Hb_022256_020 Hb_022256_020 Hb_000363_210--Hb_022256_020 Hb_001189_140 Hb_001189_140 Hb_000363_210--Hb_001189_140 Hb_000983_090 Hb_000983_090 Hb_000363_210--Hb_000983_090 Hb_001104_170 Hb_001104_170 Hb_000363_210--Hb_001104_170 Hb_002217_170 Hb_002217_170 Hb_000363_210--Hb_002217_170 Hb_003082_010 Hb_003082_010 Hb_000363_210--Hb_003082_010 Hb_110560_010 Hb_110560_010 Hb_000225_060--Hb_110560_010 Hb_000099_150 Hb_000099_150 Hb_000225_060--Hb_000099_150 Hb_006538_080 Hb_006538_080 Hb_000225_060--Hb_006538_080 Hb_001102_240 Hb_001102_240 Hb_000225_060--Hb_001102_240 Hb_002701_010 Hb_002701_010 Hb_000225_060--Hb_002701_010 Hb_003994_060--Hb_010883_090 Hb_000189_560 Hb_000189_560 Hb_003994_060--Hb_000189_560 Hb_000185_030 Hb_000185_030 Hb_003994_060--Hb_000185_030 Hb_001021_080 Hb_001021_080 Hb_003994_060--Hb_001021_080 Hb_008770_030 Hb_008770_030 Hb_003994_060--Hb_008770_030 Hb_004705_140 Hb_004705_140 Hb_003994_060--Hb_004705_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
207.96 289.925 187.22 211.968 146.809 103.278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
133.135 294.247 377.985 293.344 32.9085

CAGE analysis