Hb_134469_010

Information

Type -
Description -
Location Contig134469: 1243-1930
Sequence    

Annotation

kegg
ID pda:103710180
description protein argonaute MEL1-like
nr
ID XP_012064649.1
description PREDICTED: protein argonaute 5 isoform X1 [Jatropha curcas]
swissprot
ID Q9SJK3
description Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2
trembl
ID A0A067LH64
description Protein argonaute OS=Jatropha curcas GN=JCGZ_05397 PE=3 SV=1
Gene Ontology
ID GO:0003676
description protein argonaute 10-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09759: 1270-1747
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_134469_010 0.0 - - PREDICTED: protein argonaute 5 isoform X1 [Jatropha curcas]
2 Hb_001427_070 0.1124543434 - - PREDICTED: xaa-Pro dipeptidase [Jatropha curcas]
3 Hb_000733_210 0.1255030922 - - putative serine/threonine protein phosphatase [Angiostrongylus costaricensis]
4 Hb_009701_010 0.1294668006 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
5 Hb_007590_070 0.1308404182 - - PREDICTED: inositol 3-kinase [Jatropha curcas]
6 Hb_011311_020 0.1340724031 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
7 Hb_000140_480 0.1352682773 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
8 Hb_006831_040 0.1370220152 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
9 Hb_002110_030 0.1372800277 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
10 Hb_172632_110 0.1385670793 - - PREDICTED: pumilio homolog 5 [Jatropha curcas]
11 Hb_010874_020 0.1422630656 - - PREDICTED: uncharacterized protein LOC105636745 [Jatropha curcas]
12 Hb_010029_020 0.1441692727 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
13 Hb_001268_110 0.1462380458 - - PREDICTED: uncharacterized protein LOC105630183 isoform X2 [Jatropha curcas]
14 Hb_073562_010 0.1468661398 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
15 Hb_001021_080 0.1469658669 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
16 Hb_000853_120 0.1492110101 - - PREDICTED: ethylene response sensor 1 [Jatropha curcas]
17 Hb_002007_240 0.1504649442 - - PREDICTED: F-box protein At1g55000 [Jatropha curcas]
18 Hb_001761_130 0.1513237882 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
19 Hb_002693_060 0.1536426105 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
20 Hb_001269_140 0.1560478535 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]

Gene co-expression network

sample Hb_134469_010 Hb_134469_010 Hb_001427_070 Hb_001427_070 Hb_134469_010--Hb_001427_070 Hb_000733_210 Hb_000733_210 Hb_134469_010--Hb_000733_210 Hb_009701_010 Hb_009701_010 Hb_134469_010--Hb_009701_010 Hb_007590_070 Hb_007590_070 Hb_134469_010--Hb_007590_070 Hb_011311_020 Hb_011311_020 Hb_134469_010--Hb_011311_020 Hb_000140_480 Hb_000140_480 Hb_134469_010--Hb_000140_480 Hb_001427_070--Hb_000140_480 Hb_001761_130 Hb_001761_130 Hb_001427_070--Hb_001761_130 Hb_000152_660 Hb_000152_660 Hb_001427_070--Hb_000152_660 Hb_006831_040 Hb_006831_040 Hb_001427_070--Hb_006831_040 Hb_002391_210 Hb_002391_210 Hb_001427_070--Hb_002391_210 Hb_002110_030 Hb_002110_030 Hb_001427_070--Hb_002110_030 Hb_000733_210--Hb_007590_070 Hb_002666_020 Hb_002666_020 Hb_000733_210--Hb_002666_020 Hb_002007_240 Hb_002007_240 Hb_000733_210--Hb_002007_240 Hb_000733_210--Hb_001427_070 Hb_001636_020 Hb_001636_020 Hb_000733_210--Hb_001636_020 Hb_009701_010--Hb_002007_240 Hb_004705_140 Hb_004705_140 Hb_009701_010--Hb_004705_140 Hb_009701_010--Hb_011311_020 Hb_000227_240 Hb_000227_240 Hb_009701_010--Hb_000227_240 Hb_000853_120 Hb_000853_120 Hb_009701_010--Hb_000853_120 Hb_009564_030 Hb_009564_030 Hb_009701_010--Hb_009564_030 Hb_090855_010 Hb_090855_010 Hb_007590_070--Hb_090855_010 Hb_010874_020 Hb_010874_020 Hb_007590_070--Hb_010874_020 Hb_000193_140 Hb_000193_140 Hb_007590_070--Hb_000193_140 Hb_010427_010 Hb_010427_010 Hb_007590_070--Hb_010427_010 Hb_000330_040 Hb_000330_040 Hb_011311_020--Hb_000330_040 Hb_073562_010 Hb_073562_010 Hb_011311_020--Hb_073562_010 Hb_000987_140 Hb_000987_140 Hb_011311_020--Hb_000987_140 Hb_011311_020--Hb_010874_020 Hb_168697_010 Hb_168697_010 Hb_011311_020--Hb_168697_010 Hb_000140_480--Hb_000152_660 Hb_000739_100 Hb_000739_100 Hb_000140_480--Hb_000739_100 Hb_000140_480--Hb_001761_130 Hb_000347_440 Hb_000347_440 Hb_000140_480--Hb_000347_440 Hb_000856_310 Hb_000856_310 Hb_000140_480--Hb_000856_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.91679 2.43583 0.382523 1.64485 1.82298 1.78796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.87346 1.17645 3.18375 4.46543 0.555148

CAGE analysis