Hb_000175_500

Information

Type -
Description -
Location Contig175: 347008-347382
Sequence    

Annotation

kegg
ID pop:POPTR_0001s17190g
description POPTRDRAFT_640631; hypothetical protein
nr
ID XP_011040039.1
description PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
swissprot
ID Q9XI29
description Uncharacterized protein At1g15400 OS=Arabidopsis thaliana GN=At1g15400 PE=1 SV=2
trembl
ID B9GKX1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s17190g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 042_H11.ab1: 346698-347420 , 049_F21.ab1: 346781-347469

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_500 0.0 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
2 Hb_004724_130 0.1003226823 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
3 Hb_001231_080 0.133884037 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Fragaria vesca subsp. vesca]
4 Hb_004218_090 0.1520405634 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
5 Hb_005000_300 0.1531463442 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
6 Hb_001141_360 0.1643342642 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
7 Hb_002235_240 0.1656425655 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
8 Hb_003506_070 0.1679112837 - - PREDICTED: calcineurin B-like protein 7 isoform X2 [Jatropha curcas]
9 Hb_001865_060 0.1689874998 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
10 Hb_018301_010 0.1697187852 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
11 Hb_000465_080 0.1704040124 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
12 Hb_001907_100 0.171449765 - - PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
13 Hb_012226_010 0.1720287845 - - PREDICTED: protein DGCR14 [Jatropha curcas]
14 Hb_006683_040 0.1727992851 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
15 Hb_103865_010 0.173231816 - - hypothetical protein 21 [Hevea brasiliensis]
16 Hb_000599_130 0.1739666872 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
17 Hb_000836_370 0.1749499167 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
18 Hb_001096_100 0.1764847533 - - conserved hypothetical protein [Ricinus communis]
19 Hb_009838_060 0.1771894484 - - conserved hypothetical protein [Ricinus communis]
20 Hb_021576_140 0.1788440556 - - PREDICTED: protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION-like [Jatropha curcas]

Gene co-expression network

sample Hb_000175_500 Hb_000175_500 Hb_004724_130 Hb_004724_130 Hb_000175_500--Hb_004724_130 Hb_001231_080 Hb_001231_080 Hb_000175_500--Hb_001231_080 Hb_004218_090 Hb_004218_090 Hb_000175_500--Hb_004218_090 Hb_005000_300 Hb_005000_300 Hb_000175_500--Hb_005000_300 Hb_001141_360 Hb_001141_360 Hb_000175_500--Hb_001141_360 Hb_002235_240 Hb_002235_240 Hb_000175_500--Hb_002235_240 Hb_001863_150 Hb_001863_150 Hb_004724_130--Hb_001863_150 Hb_004724_130--Hb_001231_080 Hb_004724_130--Hb_002235_240 Hb_000538_190 Hb_000538_190 Hb_004724_130--Hb_000538_190 Hb_004724_130--Hb_001141_360 Hb_000836_370 Hb_000836_370 Hb_001231_080--Hb_000836_370 Hb_001231_080--Hb_005000_300 Hb_000056_300 Hb_000056_300 Hb_001231_080--Hb_000056_300 Hb_002942_110 Hb_002942_110 Hb_001231_080--Hb_002942_110 Hb_128695_030 Hb_128695_030 Hb_001231_080--Hb_128695_030 Hb_004195_120 Hb_004195_120 Hb_001231_080--Hb_004195_120 Hb_018301_010 Hb_018301_010 Hb_004218_090--Hb_018301_010 Hb_127599_010 Hb_127599_010 Hb_004218_090--Hb_127599_010 Hb_006683_040 Hb_006683_040 Hb_004218_090--Hb_006683_040 Hb_000465_080 Hb_000465_080 Hb_004218_090--Hb_000465_080 Hb_000061_490 Hb_000061_490 Hb_004218_090--Hb_000061_490 Hb_000120_420 Hb_000120_420 Hb_004218_090--Hb_000120_420 Hb_005000_300--Hb_000836_370 Hb_005000_300--Hb_000465_080 Hb_005000_300--Hb_000056_300 Hb_003078_030 Hb_003078_030 Hb_005000_300--Hb_003078_030 Hb_005054_310 Hb_005054_310 Hb_005000_300--Hb_005054_310 Hb_001865_060 Hb_001865_060 Hb_001141_360--Hb_001865_060 Hb_003494_060 Hb_003494_060 Hb_001141_360--Hb_003494_060 Hb_000062_080 Hb_000062_080 Hb_001141_360--Hb_000062_080 Hb_003120_050 Hb_003120_050 Hb_001141_360--Hb_003120_050 Hb_012725_040 Hb_012725_040 Hb_001141_360--Hb_012725_040 Hb_012226_010 Hb_012226_010 Hb_001141_360--Hb_012226_010 Hb_129204_060 Hb_129204_060 Hb_002235_240--Hb_129204_060 Hb_000836_120 Hb_000836_120 Hb_002235_240--Hb_000836_120 Hb_003849_260 Hb_003849_260 Hb_002235_240--Hb_003849_260 Hb_000215_410 Hb_000215_410 Hb_002235_240--Hb_000215_410 Hb_002235_240--Hb_001141_360 Hb_002235_240--Hb_001863_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
167.134 391.226 64.4768 57.4229 52.9198 84.3529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.069 26.3144 41.2246 74.1878 13.7389

CAGE analysis