Hb_088084_010

Information

Type -
Description -
Location Contig88084: 58-1008
Sequence    

Annotation

kegg
ID rcu:RCOM_0910800
description cation-transporting atpase plant, putative (EC:3.6.3.8)
nr
ID XP_012069933.1
description PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
swissprot
ID Q9LIK7
description Putative calcium-transporting ATPase 13, plasma membrane-type OS=Arabidopsis thaliana GN=ACA13 PE=3 SV=1
trembl
ID A0A067KVP2
description Calcium-transporting ATPase OS=Jatropha curcas GN=JCGZ_02244 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_088084_010 0.0 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
2 Hb_001277_140 0.1521269609 - - PREDICTED: plasma membrane calcium-transporting ATPase 2-like [Takifugu rubripes]
3 Hb_002217_270 0.1832931285 - - PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
4 Hb_136886_010 0.1976169241 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
5 Hb_000960_010 0.1997437125 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_143863_010 0.2051416122 - - PREDICTED: uncharacterized protein LOC105113187 isoform X2 [Populus euphratica]
7 Hb_131956_010 0.2052424747 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
8 Hb_001546_110 0.2156301235 - - PREDICTED: leucine-rich repeat extensin-like protein 3 [Jatropha curcas]
9 Hb_012760_180 0.2276999016 - - Basic-leucine zipper transcription factor family protein, putative [Theobroma cacao]
10 Hb_127819_010 0.2323697308 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
11 Hb_000015_180 0.2380250169 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
12 Hb_090459_010 0.2399288142 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
13 Hb_001529_030 0.2421667409 - - hypothetical protein PRUPE_ppa024472mg, partial [Prunus persica]
14 Hb_001565_120 0.245526411 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
15 Hb_000220_090 0.2460810919 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
16 Hb_000434_050 0.2491127052 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
17 Hb_003053_060 0.2492664448 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
18 Hb_056012_010 0.2518086269 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
19 Hb_000465_330 0.2524400168 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
20 Hb_003038_010 0.2526445006 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_088084_010 Hb_088084_010 Hb_001277_140 Hb_001277_140 Hb_088084_010--Hb_001277_140 Hb_002217_270 Hb_002217_270 Hb_088084_010--Hb_002217_270 Hb_136886_010 Hb_136886_010 Hb_088084_010--Hb_136886_010 Hb_000960_010 Hb_000960_010 Hb_088084_010--Hb_000960_010 Hb_143863_010 Hb_143863_010 Hb_088084_010--Hb_143863_010 Hb_131956_010 Hb_131956_010 Hb_088084_010--Hb_131956_010 Hb_001529_030 Hb_001529_030 Hb_001277_140--Hb_001529_030 Hb_002760_060 Hb_002760_060 Hb_001277_140--Hb_002760_060 Hb_001922_160 Hb_001922_160 Hb_001277_140--Hb_001922_160 Hb_001277_140--Hb_131956_010 Hb_003053_060 Hb_003053_060 Hb_001277_140--Hb_003053_060 Hb_004787_100 Hb_004787_100 Hb_002217_270--Hb_004787_100 Hb_002217_270--Hb_136886_010 Hb_005568_060 Hb_005568_060 Hb_002217_270--Hb_005568_060 Hb_004324_290 Hb_004324_290 Hb_002217_270--Hb_004324_290 Hb_000434_050 Hb_000434_050 Hb_002217_270--Hb_000434_050 Hb_000015_180 Hb_000015_180 Hb_002217_270--Hb_000015_180 Hb_136886_010--Hb_000960_010 Hb_127819_010 Hb_127819_010 Hb_136886_010--Hb_127819_010 Hb_000465_330 Hb_000465_330 Hb_136886_010--Hb_000465_330 Hb_136886_010--Hb_000015_180 Hb_002835_260 Hb_002835_260 Hb_136886_010--Hb_002835_260 Hb_000960_010--Hb_127819_010 Hb_090459_010 Hb_090459_010 Hb_000960_010--Hb_090459_010 Hb_000960_010--Hb_143863_010 Hb_102100_010 Hb_102100_010 Hb_000960_010--Hb_102100_010 Hb_000960_010--Hb_000015_180 Hb_143863_010--Hb_136886_010 Hb_143863_010--Hb_090459_010 Hb_001565_120 Hb_001565_120 Hb_143863_010--Hb_001565_120 Hb_000488_020 Hb_000488_020 Hb_143863_010--Hb_000488_020 Hb_011885_010 Hb_011885_010 Hb_143863_010--Hb_011885_010 Hb_002235_240 Hb_002235_240 Hb_131956_010--Hb_002235_240 Hb_022137_040 Hb_022137_040 Hb_131956_010--Hb_022137_040 Hb_129204_060 Hb_129204_060 Hb_131956_010--Hb_129204_060 Hb_009838_060 Hb_009838_060 Hb_131956_010--Hb_009838_060 Hb_004800_190 Hb_004800_190 Hb_131956_010--Hb_004800_190 Hb_004724_130 Hb_004724_130 Hb_131956_010--Hb_004724_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.80012 30.837 2.1264 2.17037 0.578156 1.06987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.917486 0.976233 0.622864 0.290542 0.432539

CAGE analysis