Hb_011885_010

Information

Type -
Description -
Location Contig11885: 2-1379
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_006375780.1
description hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
swissprot
ID P60838
description Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011885_010 0.0 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
2 Hb_009897_020 0.1549315533 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
3 Hb_162074_010 0.1585488936 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
4 Hb_000488_020 0.1709223328 - - PREDICTED: UDP-glucose iridoid glucosyltransferase-like [Jatropha curcas]
5 Hb_004800_190 0.1793699937 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
6 Hb_000225_050 0.1905424652 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
7 Hb_001514_060 0.1907366386 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
8 Hb_012760_180 0.1934197951 - - Basic-leucine zipper transcription factor family protein, putative [Theobroma cacao]
9 Hb_138575_010 0.1949312041 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
10 Hb_001565_120 0.1949949222 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
11 Hb_143863_010 0.2023857284 - - PREDICTED: uncharacterized protein LOC105113187 isoform X2 [Populus euphratica]
12 Hb_102100_010 0.2027034147 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
13 Hb_000960_010 0.2056122416 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
14 Hb_001141_360 0.2098042145 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
15 Hb_028795_010 0.2136905596 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
16 Hb_056012_010 0.2139776818 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
17 Hb_002760_040 0.214724548 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
18 Hb_007951_120 0.2160496674 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
19 Hb_151671_010 0.2160927727 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
20 Hb_021576_140 0.2191532345 - - PREDICTED: protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION-like [Jatropha curcas]

Gene co-expression network

sample Hb_011885_010 Hb_011885_010 Hb_009897_020 Hb_009897_020 Hb_011885_010--Hb_009897_020 Hb_162074_010 Hb_162074_010 Hb_011885_010--Hb_162074_010 Hb_000488_020 Hb_000488_020 Hb_011885_010--Hb_000488_020 Hb_004800_190 Hb_004800_190 Hb_011885_010--Hb_004800_190 Hb_000225_050 Hb_000225_050 Hb_011885_010--Hb_000225_050 Hb_001514_060 Hb_001514_060 Hb_011885_010--Hb_001514_060 Hb_009897_020--Hb_162074_010 Hb_009897_020--Hb_004800_190 Hb_002760_040 Hb_002760_040 Hb_009897_020--Hb_002760_040 Hb_001865_060 Hb_001865_060 Hb_009897_020--Hb_001865_060 Hb_002686_400 Hb_002686_400 Hb_009897_020--Hb_002686_400 Hb_001141_360 Hb_001141_360 Hb_009897_020--Hb_001141_360 Hb_012725_040 Hb_012725_040 Hb_162074_010--Hb_012725_040 Hb_185513_010 Hb_185513_010 Hb_162074_010--Hb_185513_010 Hb_056012_010 Hb_056012_010 Hb_162074_010--Hb_056012_010 Hb_162074_010--Hb_004800_190 Hb_162074_010--Hb_001865_060 Hb_000488_020--Hb_001514_060 Hb_000488_020--Hb_004800_190 Hb_143863_010 Hb_143863_010 Hb_000488_020--Hb_143863_010 Hb_000488_020--Hb_009897_020 Hb_000540_010 Hb_000540_010 Hb_000488_020--Hb_000540_010 Hb_004800_190--Hb_001141_360 Hb_003849_260 Hb_003849_260 Hb_004800_190--Hb_003849_260 Hb_004800_190--Hb_001865_060 Hb_003494_060 Hb_003494_060 Hb_004800_190--Hb_003494_060 Hb_009372_010 Hb_009372_010 Hb_000225_050--Hb_009372_010 Hb_153161_010 Hb_153161_010 Hb_000225_050--Hb_153161_010 Hb_021576_140 Hb_021576_140 Hb_000225_050--Hb_021576_140 Hb_028795_010 Hb_028795_010 Hb_000225_050--Hb_028795_010 Hb_018118_040 Hb_018118_040 Hb_000225_050--Hb_018118_040 Hb_001514_060--Hb_162074_010 Hb_001514_060--Hb_009897_020 Hb_004648_070 Hb_004648_070 Hb_001514_060--Hb_004648_070 Hb_000732_080 Hb_000732_080 Hb_001514_060--Hb_000732_080 Hb_001514_060--Hb_002760_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.84812 67.8997 6.43036 3.90791 12.3929 8.30021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.336647 0.0993024 2.21322 6.42147 1.91478

CAGE analysis