Hb_018118_040

Information

Type -
Description -
Location Contig18118: 37209-37403
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018118_040 0.0 - - -
2 Hb_087086_020 0.2115549335 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
3 Hb_000152_510 0.2442746342 - - kinase, putative [Ricinus communis]
4 Hb_000538_010 0.2476258267 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 1 isoform X2 [Jatropha curcas]
5 Hb_000225_050 0.2526427507 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
6 Hb_004204_050 0.2585914735 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
7 Hb_025214_090 0.2643700306 - - clathrin assembly protein, putative [Ricinus communis]
8 Hb_001300_100 0.2646146972 - - -
9 Hb_002928_160 0.2683139178 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
10 Hb_153161_010 0.2687180851 - - phospholipid-transporting atpase, putative [Ricinus communis]
11 Hb_002974_040 0.2719316036 - - GRF zinc finger containing protein [Medicago truncatula]
12 Hb_004570_030 0.2791885637 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001529_060 0.2799117649 - - PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Jatropha curcas]
14 Hb_000832_330 0.2799940152 - - PREDICTED: uncharacterized protein LOC102661627 [Glycine max]
15 Hb_001565_020 0.2800862533 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial, partial [Jatropha curcas]
16 Hb_107281_010 0.2802485282 - - protein with unknown function [Ricinus communis]
17 Hb_001414_140 0.2809129638 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Populus euphratica]
18 Hb_002805_170 0.2811665302 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
19 Hb_001414_130 0.2821487327 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
20 Hb_001703_130 0.2865085864 - - PREDICTED: vesicle transport v-SNARE 12-like [Populus euphratica]

Gene co-expression network

sample Hb_018118_040 Hb_018118_040 Hb_087086_020 Hb_087086_020 Hb_018118_040--Hb_087086_020 Hb_000152_510 Hb_000152_510 Hb_018118_040--Hb_000152_510 Hb_000538_010 Hb_000538_010 Hb_018118_040--Hb_000538_010 Hb_000225_050 Hb_000225_050 Hb_018118_040--Hb_000225_050 Hb_004204_050 Hb_004204_050 Hb_018118_040--Hb_004204_050 Hb_025214_090 Hb_025214_090 Hb_018118_040--Hb_025214_090 Hb_002928_160 Hb_002928_160 Hb_087086_020--Hb_002928_160 Hb_001300_100 Hb_001300_100 Hb_087086_020--Hb_001300_100 Hb_063805_010 Hb_063805_010 Hb_087086_020--Hb_063805_010 Hb_005291_040 Hb_005291_040 Hb_087086_020--Hb_005291_040 Hb_027472_210 Hb_027472_210 Hb_087086_020--Hb_027472_210 Hb_003126_030 Hb_003126_030 Hb_087086_020--Hb_003126_030 Hb_000152_510--Hb_000538_010 Hb_000904_130 Hb_000904_130 Hb_000152_510--Hb_000904_130 Hb_004724_220 Hb_004724_220 Hb_000152_510--Hb_004724_220 Hb_007403_110 Hb_007403_110 Hb_000152_510--Hb_007403_110 Hb_001059_080 Hb_001059_080 Hb_000152_510--Hb_001059_080 Hb_031711_010 Hb_031711_010 Hb_000152_510--Hb_031711_010 Hb_001307_010 Hb_001307_010 Hb_000538_010--Hb_001307_010 Hb_000538_010--Hb_031711_010 Hb_000390_220 Hb_000390_220 Hb_000538_010--Hb_000390_220 Hb_013394_060 Hb_013394_060 Hb_000538_010--Hb_013394_060 Hb_000920_250 Hb_000920_250 Hb_000538_010--Hb_000920_250 Hb_001189_130 Hb_001189_130 Hb_000538_010--Hb_001189_130 Hb_011885_010 Hb_011885_010 Hb_000225_050--Hb_011885_010 Hb_009372_010 Hb_009372_010 Hb_000225_050--Hb_009372_010 Hb_153161_010 Hb_153161_010 Hb_000225_050--Hb_153161_010 Hb_021576_140 Hb_021576_140 Hb_000225_050--Hb_021576_140 Hb_028795_010 Hb_028795_010 Hb_000225_050--Hb_028795_010 Hb_002631_320 Hb_002631_320 Hb_004204_050--Hb_002631_320 Hb_004204_050--Hb_007403_110 Hb_000291_030 Hb_000291_030 Hb_004204_050--Hb_000291_030 Hb_004712_170 Hb_004712_170 Hb_004204_050--Hb_004712_170 Hb_001377_360 Hb_001377_360 Hb_004204_050--Hb_001377_360 Hb_004204_050--Hb_025214_090 Hb_025214_090--Hb_004712_170 Hb_025214_090--Hb_000152_510 Hb_025214_090--Hb_002631_320 Hb_007592_020 Hb_007592_020 Hb_025214_090--Hb_007592_020 Hb_007441_110 Hb_007441_110 Hb_025214_090--Hb_007441_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.94154 5.98455 2.96183 0 5.02619 1.34518
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.34059 1.43065 1.22915 0

CAGE analysis