Hb_002631_320

Information

Type -
Description -
Location Contig2631: 294992-308475
Sequence    

Annotation

kegg
ID rcu:RCOM_1575290
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID KDP25093.1
description hypothetical protein JCGZ_22628 [Jatropha curcas]
swissprot
ID C0LGH2
description Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=2 SV=2
trembl
ID A0A067JQH0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22628 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at1g56130

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27491: 296939-298727 , PASA_asmbl_27492: 304477-307887
cDNA
(Sanger)
(ID:Location)		 002_F22.ab1: 296939-298727

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002631_320 0.0 - - hypothetical protein JCGZ_22628 [Jatropha curcas]
2 Hb_000291_030 0.1073397922 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Eucalyptus grandis]
3 Hb_004204_050 0.1272116929 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
4 Hb_004635_030 0.1530427582 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
5 Hb_002478_040 0.1546435675 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 2C, putative [Ricinus communis]
6 Hb_001377_360 0.1580180817 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
7 Hb_000011_050 0.1602933877 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
8 Hb_007403_110 0.1604502422 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]
9 Hb_004236_030 0.1613112772 - - unknown [Lotus japonicus]
10 Hb_004724_220 0.165177155 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
11 Hb_174829_020 0.1654506188 transcription factor TF Family: C2C2-Dof cyclic dof factor 2 [Jatropha curcas]
12 Hb_000059_340 0.1710776916 transcription factor TF Family: SOH1 uncharacterized protein LOC100527879 [Glycine max]
13 Hb_000579_190 0.1750634156 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
14 Hb_000152_760 0.1792041464 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000866_280 0.1801845298 - - PREDICTED: seven transmembrane domain-containing tyrosine-protein kinase 1-like [Jatropha curcas]
16 Hb_000979_060 0.1803103107 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
17 Hb_185516_010 0.1850202146 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
18 Hb_001477_070 0.1862491792 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000152_150 0.1899825274 - - PREDICTED: uncharacterized protein LOC105648558 [Jatropha curcas]
20 Hb_063805_010 0.1912466005 - - -

Gene co-expression network

sample Hb_002631_320 Hb_002631_320 Hb_000291_030 Hb_000291_030 Hb_002631_320--Hb_000291_030 Hb_004204_050 Hb_004204_050 Hb_002631_320--Hb_004204_050 Hb_004635_030 Hb_004635_030 Hb_002631_320--Hb_004635_030 Hb_002478_040 Hb_002478_040 Hb_002631_320--Hb_002478_040 Hb_001377_360 Hb_001377_360 Hb_002631_320--Hb_001377_360 Hb_000011_050 Hb_000011_050 Hb_002631_320--Hb_000011_050 Hb_000291_030--Hb_000011_050 Hb_000579_190 Hb_000579_190 Hb_000291_030--Hb_000579_190 Hb_000979_060 Hb_000979_060 Hb_000291_030--Hb_000979_060 Hb_000291_030--Hb_004635_030 Hb_004236_030 Hb_004236_030 Hb_000291_030--Hb_004236_030 Hb_007403_110 Hb_007403_110 Hb_004204_050--Hb_007403_110 Hb_004204_050--Hb_000291_030 Hb_004712_170 Hb_004712_170 Hb_004204_050--Hb_004712_170 Hb_004204_050--Hb_001377_360 Hb_025214_090 Hb_025214_090 Hb_004204_050--Hb_025214_090 Hb_004635_030--Hb_002478_040 Hb_005194_020 Hb_005194_020 Hb_004635_030--Hb_005194_020 Hb_006538_130 Hb_006538_130 Hb_004635_030--Hb_006538_130 Hb_008695_090 Hb_008695_090 Hb_004635_030--Hb_008695_090 Hb_001477_070 Hb_001477_070 Hb_004635_030--Hb_001477_070 Hb_002478_040--Hb_000979_060 Hb_000152_760 Hb_000152_760 Hb_002478_040--Hb_000152_760 Hb_002478_040--Hb_000579_190 Hb_013405_150 Hb_013405_150 Hb_002478_040--Hb_013405_150 Hb_003605_050 Hb_003605_050 Hb_002478_040--Hb_003605_050 Hb_001377_360--Hb_007403_110 Hb_004724_220 Hb_004724_220 Hb_001377_360--Hb_004724_220 Hb_001377_360--Hb_000291_030 Hb_001377_360--Hb_001477_070 Hb_001377_360--Hb_004635_030 Hb_002228_110 Hb_002228_110 Hb_001377_360--Hb_002228_110 Hb_000925_030 Hb_000925_030 Hb_000011_050--Hb_000925_030 Hb_000363_350 Hb_000363_350 Hb_000011_050--Hb_000363_350 Hb_000011_050--Hb_000979_060 Hb_174829_020 Hb_174829_020 Hb_000011_050--Hb_174829_020 Hb_002311_480 Hb_002311_480 Hb_000011_050--Hb_002311_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.77635 14.9843 16.7299 1.47804 4.72167 3.45801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.09928 5.3022 4.63739 2.80776 0.400219

CAGE analysis