Hb_004712_170

Information

Type -
Description -
Location Contig4712: 108415-108762
Sequence    

Annotation

kegg
ID tru:101072415
description RING finger protein 126-like
nr
ID XP_012071264.1
description PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
swissprot
ID Q6DIP3
description E3 ubiquitin-protein ligase RNF126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
trembl
ID A0A067L493
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01072 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44277: 104824-107449
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004712_170 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
2 Hb_007403_110 0.194960226 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]
3 Hb_004204_050 0.1976545568 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
4 Hb_025214_090 0.2005004744 - - clathrin assembly protein, putative [Ricinus communis]
5 Hb_001377_360 0.2059368558 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
6 Hb_002631_320 0.2086361936 - - hypothetical protein JCGZ_22628 [Jatropha curcas]
7 Hb_000179_240 0.2087941133 - - PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]
8 Hb_005488_120 0.2129469932 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
9 Hb_033363_060 0.2190726853 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
10 Hb_000152_510 0.2195608378 - - kinase, putative [Ricinus communis]
11 Hb_027402_040 0.2253473332 - - Thioredoxin II, putative [Ricinus communis]
12 Hb_091226_010 0.2256222165 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
13 Hb_000834_240 0.2286634319 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
14 Hb_000291_030 0.2292683301 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Eucalyptus grandis]
15 Hb_000465_080 0.2296052925 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
16 Hb_020400_040 0.2318757822 - - PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Jatropha curcas]
17 Hb_000925_030 0.2320412511 - - ATP-dependent RNA helicase, putative [Ricinus communis]
18 Hb_012634_020 0.2377073017 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
19 Hb_005276_170 0.2401247211 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
20 Hb_004724_220 0.2405550777 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]

Gene co-expression network

sample Hb_004712_170 Hb_004712_170 Hb_007403_110 Hb_007403_110 Hb_004712_170--Hb_007403_110 Hb_004204_050 Hb_004204_050 Hb_004712_170--Hb_004204_050 Hb_025214_090 Hb_025214_090 Hb_004712_170--Hb_025214_090 Hb_001377_360 Hb_001377_360 Hb_004712_170--Hb_001377_360 Hb_002631_320 Hb_002631_320 Hb_004712_170--Hb_002631_320 Hb_000179_240 Hb_000179_240 Hb_004712_170--Hb_000179_240 Hb_007403_110--Hb_001377_360 Hb_000291_030 Hb_000291_030 Hb_007403_110--Hb_000291_030 Hb_008695_090 Hb_008695_090 Hb_007403_110--Hb_008695_090 Hb_002228_110 Hb_002228_110 Hb_007403_110--Hb_002228_110 Hb_000084_030 Hb_000084_030 Hb_007403_110--Hb_000084_030 Hb_004724_220 Hb_004724_220 Hb_007403_110--Hb_004724_220 Hb_004204_050--Hb_002631_320 Hb_004204_050--Hb_007403_110 Hb_004204_050--Hb_000291_030 Hb_004204_050--Hb_001377_360 Hb_004204_050--Hb_025214_090 Hb_000152_510 Hb_000152_510 Hb_025214_090--Hb_000152_510 Hb_025214_090--Hb_002631_320 Hb_007592_020 Hb_007592_020 Hb_025214_090--Hb_007592_020 Hb_007441_110 Hb_007441_110 Hb_025214_090--Hb_007441_110 Hb_001377_360--Hb_004724_220 Hb_001377_360--Hb_000291_030 Hb_001477_070 Hb_001477_070 Hb_001377_360--Hb_001477_070 Hb_004635_030 Hb_004635_030 Hb_001377_360--Hb_004635_030 Hb_001377_360--Hb_002228_110 Hb_002631_320--Hb_000291_030 Hb_002631_320--Hb_004635_030 Hb_002478_040 Hb_002478_040 Hb_002631_320--Hb_002478_040 Hb_002631_320--Hb_001377_360 Hb_000011_050 Hb_000011_050 Hb_002631_320--Hb_000011_050 Hb_002685_200 Hb_002685_200 Hb_000179_240--Hb_002685_200 Hb_000186_200 Hb_000186_200 Hb_000179_240--Hb_000186_200 Hb_002053_130 Hb_002053_130 Hb_000179_240--Hb_002053_130 Hb_000084_240 Hb_000084_240 Hb_000179_240--Hb_000084_240 Hb_000925_030 Hb_000925_030 Hb_000179_240--Hb_000925_030 Hb_002205_010 Hb_002205_010 Hb_000179_240--Hb_002205_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.406148 3.4268 1.95639 0.461011 0.944795 0.939706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.26467 1.24809 0.316825 0.184859 0

CAGE analysis