Hb_007592_020

Information

Type -
Description -
Location Contig7592: 18911-20584
Sequence    

Annotation

kegg
ID rcu:RCOM_0771540
description acyltransferase, putative
nr
ID XP_002530372.1
description acyltransferase, putative [Ricinus communis]
swissprot
ID Q570B4
description 3-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana GN=FDH PE=1 SV=2
trembl
ID B9SWK3
description 3-ketoacyl-CoA synthase OS=Ricinus communis GN=RCOM_0771540 PE=3 SV=1
Gene Ontology
ID GO:0016020
description 3-ketoacyl- synthase 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007592_020 0.0 - - acyltransferase, putative [Ricinus communis]
2 Hb_032264_080 0.2027356231 - - PREDICTED: uncharacterized protein LOC105648216 [Jatropha curcas]
3 Hb_025214_090 0.2305956644 - - clathrin assembly protein, putative [Ricinus communis]
4 Hb_000152_510 0.2412829509 - - kinase, putative [Ricinus communis]
5 Hb_000181_410 0.2428137121 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005883_070 0.2447891978 - - PREDICTED: probable myosin-binding protein 5 [Jatropha curcas]
7 Hb_008725_060 0.2460876076 - - Protein COBRA precursor, putative [Ricinus communis]
8 Hb_000187_030 0.2491416594 - - PREDICTED: cyclin-D4-1-like isoform X2 [Jatropha curcas]
9 Hb_004204_050 0.2516797237 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
10 Hb_002631_320 0.2517826495 - - hypothetical protein JCGZ_22628 [Jatropha curcas]
11 Hb_001300_100 0.2532479944 - - -
12 Hb_002631_220 0.2572618457 - - Patellin-4, putative [Ricinus communis]
13 Hb_004724_220 0.2630264038 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
14 Hb_131864_030 0.2648058022 transcription factor TF Family: C2H2 transcription factor, putative [Ricinus communis]
15 Hb_000291_030 0.2689221774 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Eucalyptus grandis]
16 Hb_163839_010 0.2727160486 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_011609_040 0.2730113808 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
18 Hb_000088_220 0.2761964571 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
19 Hb_003119_050 0.2778464579 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
20 Hb_003605_150 0.2832779558 - - chitinase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_007592_020 Hb_007592_020 Hb_032264_080 Hb_032264_080 Hb_007592_020--Hb_032264_080 Hb_025214_090 Hb_025214_090 Hb_007592_020--Hb_025214_090 Hb_000152_510 Hb_000152_510 Hb_007592_020--Hb_000152_510 Hb_000181_410 Hb_000181_410 Hb_007592_020--Hb_000181_410 Hb_005883_070 Hb_005883_070 Hb_007592_020--Hb_005883_070 Hb_008725_060 Hb_008725_060 Hb_007592_020--Hb_008725_060 Hb_163839_010 Hb_163839_010 Hb_032264_080--Hb_163839_010 Hb_002631_320 Hb_002631_320 Hb_032264_080--Hb_002631_320 Hb_000088_220 Hb_000088_220 Hb_032264_080--Hb_000088_220 Hb_004724_220 Hb_004724_220 Hb_032264_080--Hb_004724_220 Hb_000187_030 Hb_000187_030 Hb_032264_080--Hb_000187_030 Hb_004712_170 Hb_004712_170 Hb_025214_090--Hb_004712_170 Hb_004204_050 Hb_004204_050 Hb_025214_090--Hb_004204_050 Hb_025214_090--Hb_000152_510 Hb_025214_090--Hb_002631_320 Hb_007441_110 Hb_007441_110 Hb_025214_090--Hb_007441_110 Hb_000538_010 Hb_000538_010 Hb_000152_510--Hb_000538_010 Hb_000904_130 Hb_000904_130 Hb_000152_510--Hb_000904_130 Hb_000152_510--Hb_004724_220 Hb_007403_110 Hb_007403_110 Hb_000152_510--Hb_007403_110 Hb_001059_080 Hb_001059_080 Hb_000152_510--Hb_001059_080 Hb_031711_010 Hb_031711_010 Hb_000152_510--Hb_031711_010 Hb_000107_470 Hb_000107_470 Hb_000181_410--Hb_000107_470 Hb_007603_020 Hb_007603_020 Hb_000181_410--Hb_007603_020 Hb_004994_130 Hb_004994_130 Hb_000181_410--Hb_004994_130 Hb_000181_410--Hb_000904_130 Hb_000181_410--Hb_000152_510 Hb_000181_410--Hb_163839_010 Hb_000185_230 Hb_000185_230 Hb_005883_070--Hb_000185_230 Hb_001059_090 Hb_001059_090 Hb_005883_070--Hb_001059_090 Hb_000109_130 Hb_000109_130 Hb_005883_070--Hb_000109_130 Hb_006775_070 Hb_006775_070 Hb_005883_070--Hb_006775_070 Hb_006545_020 Hb_006545_020 Hb_005883_070--Hb_006545_020 Hb_047442_010 Hb_047442_010 Hb_005883_070--Hb_047442_010 Hb_000009_220 Hb_000009_220 Hb_008725_060--Hb_000009_220 Hb_003746_030 Hb_003746_030 Hb_008725_060--Hb_003746_030 Hb_000369_010 Hb_000369_010 Hb_008725_060--Hb_000369_010 Hb_002615_070 Hb_002615_070 Hb_008725_060--Hb_002615_070 Hb_001950_070 Hb_001950_070 Hb_008725_060--Hb_001950_070 Hb_014231_020 Hb_014231_020 Hb_008725_060--Hb_014231_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0863478 0.130114 0.245317 0.050346 0.126417 0.0116719
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.09542 0.0448622 0.028556 0

CAGE analysis