Hb_163839_010

Information

Type -
Description -
Location Contig163839: 13829-17153
Sequence    

Annotation

kegg
ID rcu:RCOM_1028070
description nucleic acid binding protein, putative
nr
ID XP_002526391.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q28C44
description CWF19-like protein 2 OS=Xenopus tropicalis GN=cwf19l2 PE=2 SV=1
trembl
ID B9SK72
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1028070 PE=4 SV=1
Gene Ontology
ID GO:0009628
description cwf19-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163839_010 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_004635_030 0.1843933975 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
3 Hb_002478_040 0.1963707783 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 2C, putative [Ricinus communis]
4 Hb_000904_130 0.1968618911 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
5 Hb_004724_220 0.2001881173 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
6 Hb_005194_020 0.2090743424 - - PREDICTED: UPF0553 protein-like isoform X1 [Jatropha curcas]
7 Hb_032264_080 0.2129494611 - - PREDICTED: uncharacterized protein LOC105648216 [Jatropha curcas]
8 Hb_004193_010 0.2166941333 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
9 Hb_008725_060 0.2188148486 - - Protein COBRA precursor, putative [Ricinus communis]
10 Hb_002631_320 0.2192330844 - - hypothetical protein JCGZ_22628 [Jatropha curcas]
11 Hb_001477_070 0.2197979839 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002681_060 0.2218571187 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
13 Hb_004375_080 0.2219591688 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF073 [Jatropha curcas]
14 Hb_003321_010 0.2221056794 - - hypothetical protein RCOM_0884420 [Ricinus communis]
15 Hb_000152_510 0.2247218994 - - kinase, putative [Ricinus communis]
16 Hb_000979_060 0.2263058646 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
17 Hb_001377_360 0.2296557352 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
18 Hb_004324_300 0.2300445685 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
19 Hb_000009_220 0.2304026522 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
20 Hb_000181_410 0.230863741 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_163839_010 Hb_163839_010 Hb_004635_030 Hb_004635_030 Hb_163839_010--Hb_004635_030 Hb_002478_040 Hb_002478_040 Hb_163839_010--Hb_002478_040 Hb_000904_130 Hb_000904_130 Hb_163839_010--Hb_000904_130 Hb_004724_220 Hb_004724_220 Hb_163839_010--Hb_004724_220 Hb_005194_020 Hb_005194_020 Hb_163839_010--Hb_005194_020 Hb_032264_080 Hb_032264_080 Hb_163839_010--Hb_032264_080 Hb_004635_030--Hb_002478_040 Hb_004635_030--Hb_005194_020 Hb_006538_130 Hb_006538_130 Hb_004635_030--Hb_006538_130 Hb_008695_090 Hb_008695_090 Hb_004635_030--Hb_008695_090 Hb_000291_030 Hb_000291_030 Hb_004635_030--Hb_000291_030 Hb_001477_070 Hb_001477_070 Hb_004635_030--Hb_001477_070 Hb_000979_060 Hb_000979_060 Hb_002478_040--Hb_000979_060 Hb_000152_760 Hb_000152_760 Hb_002478_040--Hb_000152_760 Hb_000579_190 Hb_000579_190 Hb_002478_040--Hb_000579_190 Hb_013405_150 Hb_013405_150 Hb_002478_040--Hb_013405_150 Hb_003605_050 Hb_003605_050 Hb_002478_040--Hb_003605_050 Hb_006346_040 Hb_006346_040 Hb_000904_130--Hb_006346_040 Hb_185516_010 Hb_185516_010 Hb_000904_130--Hb_185516_010 Hb_000904_130--Hb_001477_070 Hb_031711_010 Hb_031711_010 Hb_000904_130--Hb_031711_010 Hb_002681_060 Hb_002681_060 Hb_000904_130--Hb_002681_060 Hb_001171_070 Hb_001171_070 Hb_000904_130--Hb_001171_070 Hb_001377_360 Hb_001377_360 Hb_004724_220--Hb_001377_360 Hb_004724_220--Hb_000291_030 Hb_004724_220--Hb_005194_020 Hb_004648_090 Hb_004648_090 Hb_004724_220--Hb_004648_090 Hb_004724_220--Hb_000979_060 Hb_004724_220--Hb_004635_030 Hb_005194_020--Hb_000979_060 Hb_000951_100 Hb_000951_100 Hb_005194_020--Hb_000951_100 Hb_002311_480 Hb_002311_480 Hb_005194_020--Hb_002311_480 Hb_011671_310 Hb_011671_310 Hb_005194_020--Hb_011671_310 Hb_001005_020 Hb_001005_020 Hb_005194_020--Hb_001005_020 Hb_007592_020 Hb_007592_020 Hb_032264_080--Hb_007592_020 Hb_002631_320 Hb_002631_320 Hb_032264_080--Hb_002631_320 Hb_000088_220 Hb_000088_220 Hb_032264_080--Hb_000088_220 Hb_032264_080--Hb_004724_220 Hb_000187_030 Hb_000187_030 Hb_032264_080--Hb_000187_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.38995 2.44087 3.87614 1.12129 1.72716 0.301171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0205 0.802716 2.54576 0.187716 0.0690642

CAGE analysis