Hb_000904_130

Information

Type -
Description -
Location Contig904: 205887-209533
Sequence    

Annotation

kegg
ID rcu:RCOM_0813600
description Protein CYPRO4, putative
nr
ID XP_012066878.1
description PREDICTED: protein CYPRO4 [Jatropha curcas]
swissprot
ID P40781
description Protein CYPRO4 OS=Cynara cardunculus GN=CYPRO4 PE=2 SV=1
trembl
ID A0A067L511
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01617 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein cypro4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61984: 206023-209543
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000904_130 0.0 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
2 Hb_006346_040 0.1408033092 - - hypothetical protein JCGZ_20335 [Jatropha curcas]
3 Hb_185516_010 0.1500063307 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
4 Hb_001477_070 0.1512026673 - - conserved hypothetical protein [Ricinus communis]
5 Hb_031711_010 0.1544231227 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
6 Hb_002681_060 0.161350184 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
7 Hb_001171_070 0.1645560019 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial-like isoform X1 [Jatropha curcas]
8 Hb_001083_050 0.1696932661 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
9 Hb_000457_050 0.1716688615 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
10 Hb_000152_510 0.1717676101 - - kinase, putative [Ricinus communis]
11 Hb_003086_190 0.1741867783 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
12 Hb_042509_030 0.1768439395 - - PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]
13 Hb_004597_010 0.1768805937 transcription factor TF Family: bHLH PREDICTED: transcription factor MYC2 [Jatropha curcas]
14 Hb_000283_130 0.1779590885 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
15 Hb_000261_220 0.1779802665 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
16 Hb_000084_030 0.1793656178 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000173_150 0.1803876314 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
18 Hb_009771_100 0.1807341302 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
19 Hb_002379_050 0.1811487742 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
20 Hb_014361_150 0.1823099727 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]

Gene co-expression network

sample Hb_000904_130 Hb_000904_130 Hb_006346_040 Hb_006346_040 Hb_000904_130--Hb_006346_040 Hb_185516_010 Hb_185516_010 Hb_000904_130--Hb_185516_010 Hb_001477_070 Hb_001477_070 Hb_000904_130--Hb_001477_070 Hb_031711_010 Hb_031711_010 Hb_000904_130--Hb_031711_010 Hb_002681_060 Hb_002681_060 Hb_000904_130--Hb_002681_060 Hb_001171_070 Hb_001171_070 Hb_000904_130--Hb_001171_070 Hb_000283_130 Hb_000283_130 Hb_006346_040--Hb_000283_130 Hb_006346_040--Hb_001171_070 Hb_005883_010 Hb_005883_010 Hb_006346_040--Hb_005883_010 Hb_007403_050 Hb_007403_050 Hb_006346_040--Hb_007403_050 Hb_000084_030 Hb_000084_030 Hb_006346_040--Hb_000084_030 Hb_000457_050 Hb_000457_050 Hb_006346_040--Hb_000457_050 Hb_000336_110 Hb_000336_110 Hb_185516_010--Hb_000336_110 Hb_001269_200 Hb_001269_200 Hb_185516_010--Hb_001269_200 Hb_000211_120 Hb_000211_120 Hb_185516_010--Hb_000211_120 Hb_001807_010 Hb_001807_010 Hb_185516_010--Hb_001807_010 Hb_000139_190 Hb_000139_190 Hb_185516_010--Hb_000139_190 Hb_014361_150 Hb_014361_150 Hb_185516_010--Hb_014361_150 Hb_001477_070--Hb_000084_030 Hb_008695_090 Hb_008695_090 Hb_001477_070--Hb_008695_090 Hb_000407_040 Hb_000407_040 Hb_001477_070--Hb_000407_040 Hb_008103_110 Hb_008103_110 Hb_001477_070--Hb_008103_110 Hb_001477_070--Hb_002681_060 Hb_001477_070--Hb_014361_150 Hb_009771_100 Hb_009771_100 Hb_031711_010--Hb_009771_100 Hb_011909_060 Hb_011909_060 Hb_031711_010--Hb_011909_060 Hb_000230_430 Hb_000230_430 Hb_031711_010--Hb_000230_430 Hb_031711_010--Hb_000457_050 Hb_001243_060 Hb_001243_060 Hb_031711_010--Hb_001243_060 Hb_007193_110 Hb_007193_110 Hb_031711_010--Hb_007193_110 Hb_002681_060--Hb_000407_040 Hb_000130_380 Hb_000130_380 Hb_002681_060--Hb_000130_380 Hb_000061_470 Hb_000061_470 Hb_002681_060--Hb_000061_470 Hb_000059_340 Hb_000059_340 Hb_002681_060--Hb_000059_340 Hb_000010_240 Hb_000010_240 Hb_002681_060--Hb_000010_240 Hb_000261_220 Hb_000261_220 Hb_001171_070--Hb_000261_220 Hb_002025_110 Hb_002025_110 Hb_001171_070--Hb_002025_110 Hb_001083_050 Hb_001083_050 Hb_001171_070--Hb_001083_050 Hb_001171_070--Hb_000457_050 Hb_005489_080 Hb_005489_080 Hb_001171_070--Hb_005489_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
148.257 219.292 156.455 54.2213 162.624 84.1468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.9547 42.7573 115.111 13.8197 7.74459

CAGE analysis