Hb_000211_120

Information

Type -
Description -
Location Contig211: 156073-160570
Sequence    

Annotation

kegg
ID rcu:RCOM_0574490
description hypothetical protein
nr
ID XP_012066186.1
description PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L341
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23764 PE=4 SV=1
Gene Ontology
ID GO:0043231
description ino80 complex subunit d-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21843: 156198-160313
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000211_120 0.0 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
2 Hb_000336_110 0.108167461 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
3 Hb_000264_080 0.1107483262 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
4 Hb_005355_030 0.1113751455 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
5 Hb_000282_030 0.114424353 - - K(+) efflux antiporter 4 [Glycine soja]
6 Hb_185516_010 0.1144598769 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
7 Hb_000061_490 0.1175464121 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
8 Hb_000363_280 0.1213952645 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: angiomotin [Cucumis sativus]
9 Hb_002272_020 0.1218391213 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
10 Hb_002043_090 0.1232207396 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
11 Hb_001225_030 0.1265719819 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
12 Hb_000926_010 0.1296737452 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
13 Hb_002477_250 0.1325385421 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
14 Hb_003117_020 0.1326151787 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
15 Hb_031527_090 0.1329456884 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 1 isoform X2 [Jatropha curcas]
16 Hb_002325_040 0.1331906695 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
17 Hb_000723_110 0.133952295 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
18 Hb_003299_030 0.1342083882 - - PREDICTED: uncharacterized protein At1g27050 isoform X1 [Jatropha curcas]
19 Hb_002483_010 0.1342115741 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
20 Hb_002228_110 0.1342629213 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]

Gene co-expression network

sample Hb_000211_120 Hb_000211_120 Hb_000336_110 Hb_000336_110 Hb_000211_120--Hb_000336_110 Hb_000264_080 Hb_000264_080 Hb_000211_120--Hb_000264_080 Hb_005355_030 Hb_005355_030 Hb_000211_120--Hb_005355_030 Hb_000282_030 Hb_000282_030 Hb_000211_120--Hb_000282_030 Hb_185516_010 Hb_185516_010 Hb_000211_120--Hb_185516_010 Hb_000061_490 Hb_000061_490 Hb_000211_120--Hb_000061_490 Hb_000336_110--Hb_000264_080 Hb_000363_280 Hb_000363_280 Hb_000336_110--Hb_000363_280 Hb_000120_420 Hb_000120_420 Hb_000336_110--Hb_000120_420 Hb_009771_100 Hb_009771_100 Hb_000336_110--Hb_009771_100 Hb_167381_020 Hb_167381_020 Hb_000336_110--Hb_167381_020 Hb_000069_590 Hb_000069_590 Hb_000336_110--Hb_000069_590 Hb_000926_010 Hb_000926_010 Hb_000264_080--Hb_000926_010 Hb_000264_080--Hb_000061_490 Hb_000227_310 Hb_000227_310 Hb_000264_080--Hb_000227_310 Hb_004410_070 Hb_004410_070 Hb_000264_080--Hb_004410_070 Hb_007017_070 Hb_007017_070 Hb_000264_080--Hb_007017_070 Hb_000576_020 Hb_000576_020 Hb_005355_030--Hb_000576_020 Hb_000329_590 Hb_000329_590 Hb_005355_030--Hb_000329_590 Hb_005355_030--Hb_000282_030 Hb_002078_220 Hb_002078_220 Hb_005355_030--Hb_002078_220 Hb_002325_040 Hb_002325_040 Hb_005355_030--Hb_002325_040 Hb_006916_040 Hb_006916_040 Hb_005355_030--Hb_006916_040 Hb_118026_010 Hb_118026_010 Hb_000282_030--Hb_118026_010 Hb_000282_030--Hb_006916_040 Hb_000076_160 Hb_000076_160 Hb_000282_030--Hb_000076_160 Hb_001205_200 Hb_001205_200 Hb_000282_030--Hb_001205_200 Hb_002272_020 Hb_002272_020 Hb_000282_030--Hb_002272_020 Hb_185516_010--Hb_000336_110 Hb_001269_200 Hb_001269_200 Hb_185516_010--Hb_001269_200 Hb_001807_010 Hb_001807_010 Hb_185516_010--Hb_001807_010 Hb_000139_190 Hb_000139_190 Hb_185516_010--Hb_000139_190 Hb_014361_150 Hb_014361_150 Hb_185516_010--Hb_014361_150 Hb_007894_130 Hb_007894_130 Hb_000061_490--Hb_007894_130 Hb_004371_010 Hb_004371_010 Hb_000061_490--Hb_004371_010 Hb_000061_490--Hb_004410_070 Hb_009780_100 Hb_009780_100 Hb_000061_490--Hb_009780_100 Hb_000061_490--Hb_009771_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.26617 11.2101 8.40939 4.21906 3.94262 5.322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.59376 4.6234 1.86877 4.14746 1.52915

CAGE analysis