Hb_002928_160

Information

Type -
Description -
Location Contig2928: 113135-116037
Sequence    

Annotation

kegg
ID rcu:RCOM_1601020
description Spotted leaf protein, putative
nr
ID XP_012073859.1
description PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
swissprot
ID Q681N2
description U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2
trembl
ID A0A067KL10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08083 PE=4 SV=1
Gene Ontology
ID GO:0003824
description u-box domain-containing protein 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30700: 113134-114551 , PASA_asmbl_30701: 114606-115338
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002928_160 0.0 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
2 Hb_001662_030 0.1390132286 - - PREDICTED: F-box protein SKIP23-like [Populus euphratica]
3 Hb_000363_280 0.1455539826 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: angiomotin [Cucumis sativus]
4 Hb_005291_040 0.1473602088 - - PREDICTED: gamma-gliadin [Jatropha curcas]
5 Hb_075449_020 0.1474368279 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
6 Hb_000045_320 0.1490412162 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
7 Hb_000283_130 0.1493389588 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
8 Hb_011909_060 0.1496604585 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
9 Hb_000034_160 0.1519137919 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
10 Hb_178127_010 0.1523243332 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]
11 Hb_185516_010 0.1589375304 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
12 Hb_025306_010 0.1616967426 transcription factor TF Family: MYB-related syringolide-induced protein 1-3-1B [Populus trichocarpa]
13 Hb_027472_210 0.162158801 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
14 Hb_087086_020 0.1622328588 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
15 Hb_000336_110 0.1625084411 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
16 Hb_003430_030 0.1633065005 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
17 Hb_001269_200 0.1633293534 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
18 Hb_007403_050 0.164139226 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
19 Hb_000390_220 0.1643478268 - - PREDICTED: uncharacterized protein LOC100244219 [Vitis vinifera]
20 Hb_006615_100 0.1657809372 - - PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002928_160 Hb_002928_160 Hb_001662_030 Hb_001662_030 Hb_002928_160--Hb_001662_030 Hb_000363_280 Hb_000363_280 Hb_002928_160--Hb_000363_280 Hb_005291_040 Hb_005291_040 Hb_002928_160--Hb_005291_040 Hb_075449_020 Hb_075449_020 Hb_002928_160--Hb_075449_020 Hb_000045_320 Hb_000045_320 Hb_002928_160--Hb_000045_320 Hb_000283_130 Hb_000283_130 Hb_002928_160--Hb_000283_130 Hb_000034_160 Hb_000034_160 Hb_001662_030--Hb_000034_160 Hb_000258_120 Hb_000258_120 Hb_001662_030--Hb_000258_120 Hb_001189_130 Hb_001189_130 Hb_001662_030--Hb_001189_130 Hb_001662_030--Hb_075449_020 Hb_000390_220 Hb_000390_220 Hb_001662_030--Hb_000390_220 Hb_001662_030--Hb_000283_130 Hb_011909_060 Hb_011909_060 Hb_000363_280--Hb_011909_060 Hb_000120_420 Hb_000120_420 Hb_000363_280--Hb_000120_420 Hb_003430_030 Hb_003430_030 Hb_000363_280--Hb_003430_030 Hb_000336_110 Hb_000336_110 Hb_000363_280--Hb_000336_110 Hb_005054_190 Hb_005054_190 Hb_000363_280--Hb_005054_190 Hb_000264_080 Hb_000264_080 Hb_000363_280--Hb_000264_080 Hb_010738_010 Hb_010738_010 Hb_005291_040--Hb_010738_010 Hb_002997_160 Hb_002997_160 Hb_005291_040--Hb_002997_160 Hb_005883_010 Hb_005883_010 Hb_005291_040--Hb_005883_010 Hb_005291_040--Hb_000283_130 Hb_007229_040 Hb_007229_040 Hb_005291_040--Hb_007229_040 Hb_001117_190 Hb_001117_190 Hb_005291_040--Hb_001117_190 Hb_075449_020--Hb_000390_220 Hb_025306_010 Hb_025306_010 Hb_075449_020--Hb_025306_010 Hb_000540_120 Hb_000540_120 Hb_075449_020--Hb_000540_120 Hb_011465_030 Hb_011465_030 Hb_075449_020--Hb_011465_030 Hb_001999_250 Hb_001999_250 Hb_075449_020--Hb_001999_250 Hb_002805_170 Hb_002805_170 Hb_000045_320--Hb_002805_170 Hb_000045_320--Hb_002997_160 Hb_000173_150 Hb_000173_150 Hb_000045_320--Hb_000173_150 Hb_012184_050 Hb_012184_050 Hb_000045_320--Hb_012184_050 Hb_001269_200 Hb_001269_200 Hb_000045_320--Hb_001269_200 Hb_000045_320--Hb_001117_190 Hb_000283_130--Hb_005883_010 Hb_000283_130--Hb_010738_010 Hb_000406_240 Hb_000406_240 Hb_000283_130--Hb_000406_240 Hb_017075_030 Hb_017075_030 Hb_000283_130--Hb_017075_030 Hb_000457_050 Hb_000457_050 Hb_000283_130--Hb_000457_050 Hb_004635_050 Hb_004635_050 Hb_000283_130--Hb_004635_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.07059 3.3744 1.47664 0.564614 1.54817 1.27561
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.317692 0.520739 0.629344 0.44816 0.219096

CAGE analysis