Hb_153161_010

Information

Type -
Description -
Location Contig153161: 274-855
Sequence    

Annotation

kegg
ID rcu:RCOM_1173290
description phospholipid-transporting atpase, putative (EC:3.6.3.1)
nr
ID XP_002517874.1
description phospholipid-transporting atpase, putative [Ricinus communis]
swissprot
ID P98205
description Phospholipid-transporting ATPase 2 OS=Arabidopsis thaliana GN=ALA2 PE=1 SV=1
trembl
ID B9RVV5
description Phospholipid-transporting ATPase OS=Ricinus communis GN=RCOM_1173290 PE=3 SV=1
Gene Ontology
ID GO:0016021
description phospholipid-transporting atpase 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153161_010 0.0 - - phospholipid-transporting atpase, putative [Ricinus communis]
2 Hb_001565_020 0.128445607 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial, partial [Jatropha curcas]
3 Hb_178127_010 0.1291858262 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]
4 Hb_128695_030 0.1470663136 - - heat shock protein, putative [Ricinus communis]
5 Hb_021530_010 0.1545536829 - - PREDICTED: la protein 1 [Jatropha curcas]
6 Hb_003096_040 0.1572477406 transcription factor TF Family: HB hypothetical protein POPTR_0005s07290g [Populus trichocarpa]
7 Hb_002942_110 0.1586439468 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
8 Hb_000120_420 0.1631240898 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
9 Hb_000024_120 0.1633994493 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
10 Hb_003228_030 0.1636484858 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
11 Hb_005610_080 0.1644755577 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005054_310 0.1693741178 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
13 Hb_021576_140 0.1701794885 - - PREDICTED: protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION-like [Jatropha curcas]
14 Hb_003430_030 0.1702745531 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
15 Hb_018301_010 0.1706022 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
16 Hb_001231_080 0.1708665615 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Fragaria vesca subsp. vesca]
17 Hb_003914_030 0.1711075733 - - -
18 Hb_011791_020 0.1734407331 - - hypothetical protein Csa_6G486930 [Cucumis sativus]
19 Hb_000836_370 0.1743393387 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
20 Hb_000422_110 0.1759931502 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]

Gene co-expression network

sample Hb_153161_010 Hb_153161_010 Hb_001565_020 Hb_001565_020 Hb_153161_010--Hb_001565_020 Hb_178127_010 Hb_178127_010 Hb_153161_010--Hb_178127_010 Hb_128695_030 Hb_128695_030 Hb_153161_010--Hb_128695_030 Hb_021530_010 Hb_021530_010 Hb_153161_010--Hb_021530_010 Hb_003096_040 Hb_003096_040 Hb_153161_010--Hb_003096_040 Hb_002942_110 Hb_002942_110 Hb_153161_010--Hb_002942_110 Hb_001565_020--Hb_178127_010 Hb_001565_020--Hb_128695_030 Hb_001454_220 Hb_001454_220 Hb_001565_020--Hb_001454_220 Hb_000422_110 Hb_000422_110 Hb_001565_020--Hb_000422_110 Hb_001565_060 Hb_001565_060 Hb_001565_020--Hb_001565_060 Hb_178127_010--Hb_128695_030 Hb_005000_300 Hb_005000_300 Hb_178127_010--Hb_005000_300 Hb_000120_420 Hb_000120_420 Hb_178127_010--Hb_000120_420 Hb_018301_010 Hb_018301_010 Hb_178127_010--Hb_018301_010 Hb_011909_060 Hb_011909_060 Hb_178127_010--Hb_011909_060 Hb_000056_300 Hb_000056_300 Hb_128695_030--Hb_000056_300 Hb_128695_030--Hb_002942_110 Hb_005054_310 Hb_005054_310 Hb_128695_030--Hb_005054_310 Hb_000836_370 Hb_000836_370 Hb_128695_030--Hb_000836_370 Hb_005610_080 Hb_005610_080 Hb_021530_010--Hb_005610_080 Hb_006132_040 Hb_006132_040 Hb_021530_010--Hb_006132_040 Hb_130389_010 Hb_130389_010 Hb_021530_010--Hb_130389_010 Hb_004236_030 Hb_004236_030 Hb_021530_010--Hb_004236_030 Hb_021530_010--Hb_005054_310 Hb_003430_030 Hb_003430_030 Hb_021530_010--Hb_003430_030 Hb_031527_070 Hb_031527_070 Hb_003096_040--Hb_031527_070 Hb_010261_010 Hb_010261_010 Hb_003096_040--Hb_010261_010 Hb_000175_350 Hb_000175_350 Hb_003096_040--Hb_000175_350 Hb_003096_040--Hb_178127_010 Hb_005510_010 Hb_005510_010 Hb_003096_040--Hb_005510_010 Hb_004195_120 Hb_004195_120 Hb_002942_110--Hb_004195_120 Hb_020178_050 Hb_020178_050 Hb_002942_110--Hb_020178_050 Hb_001369_770 Hb_001369_770 Hb_002942_110--Hb_001369_770 Hb_004324_060 Hb_004324_060 Hb_002942_110--Hb_004324_060 Hb_003895_020 Hb_003895_020 Hb_002942_110--Hb_003895_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.523 52.3034 19.9858 4.93787 26.7864 12.0116
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.41967 1.71106 2.64916 10.2531 5.47897

CAGE analysis