Hb_003096_040

Information

Type transcription factor
Description TF Family: HB
Location Contig3096: 43602-45166
Sequence    

Annotation

kegg
ID pop:POPTR_0005s07290g
description POPTRDRAFT_715838; hypothetical protein
nr
ID XP_002306291.2
description hypothetical protein POPTR_0005s07290g [Populus trichocarpa]
swissprot
ID Q940J1
description Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana GN=ATHB-16 PE=2 SV=2
trembl
ID B9H4Q5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s07290g PE=4 SV=2
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein athb-6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32708: 43289-45724 , PASA_asmbl_32709: 43305-44150
cDNA
(Sanger)
(ID:Location)		 030_F19.ab1: 43289-44285 , 036_D19.ab1: 43289-44286 , 053_L08.ab1: 43300-43938

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003096_040 0.0 transcription factor TF Family: HB hypothetical protein POPTR_0005s07290g [Populus trichocarpa]
2 Hb_031527_070 0.1531007792 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
3 Hb_010261_010 0.1546122792 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
4 Hb_153161_010 0.1572477406 - - phospholipid-transporting atpase, putative [Ricinus communis]
5 Hb_000175_350 0.1613149503 - - phopholipase d alpha, putative [Ricinus communis]
6 Hb_178127_010 0.1679215097 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]
7 Hb_005510_010 0.1683646659 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
8 Hb_021576_140 0.1690501832 - - PREDICTED: protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION-like [Jatropha curcas]
9 Hb_018133_030 0.1693526314 - - Heme-binding protein, putative [Ricinus communis]
10 Hb_003914_030 0.1702072654 - - -
11 Hb_003633_140 0.1750102584 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
12 Hb_000599_130 0.1757967169 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
13 Hb_002316_050 0.177980053 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003107_020 0.1814131005 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
15 Hb_009028_030 0.1825492094 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
16 Hb_007481_030 0.1870715535 - - PREDICTED: uncharacterized protein LOC105628433 [Jatropha curcas]
17 Hb_002609_090 0.18836933 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_000521_170 0.1910108198 - - PREDICTED: callose synthase 1 [Jatropha curcas]
19 Hb_000422_110 0.191066775 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
20 Hb_001565_020 0.1916746692 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial, partial [Jatropha curcas]

Gene co-expression network

sample Hb_003096_040 Hb_003096_040 Hb_031527_070 Hb_031527_070 Hb_003096_040--Hb_031527_070 Hb_010261_010 Hb_010261_010 Hb_003096_040--Hb_010261_010 Hb_153161_010 Hb_153161_010 Hb_003096_040--Hb_153161_010 Hb_000175_350 Hb_000175_350 Hb_003096_040--Hb_000175_350 Hb_178127_010 Hb_178127_010 Hb_003096_040--Hb_178127_010 Hb_005510_010 Hb_005510_010 Hb_003096_040--Hb_005510_010 Hb_005333_030 Hb_005333_030 Hb_031527_070--Hb_005333_030 Hb_003025_050 Hb_003025_050 Hb_031527_070--Hb_003025_050 Hb_002890_100 Hb_002890_100 Hb_031527_070--Hb_002890_100 Hb_009028_030 Hb_009028_030 Hb_031527_070--Hb_009028_030 Hb_004195_060 Hb_004195_060 Hb_031527_070--Hb_004195_060 Hb_003633_140 Hb_003633_140 Hb_010261_010--Hb_003633_140 Hb_003525_020 Hb_003525_020 Hb_010261_010--Hb_003525_020 Hb_012404_040 Hb_012404_040 Hb_010261_010--Hb_012404_040 Hb_000538_190 Hb_000538_190 Hb_010261_010--Hb_000538_190 Hb_001269_040 Hb_001269_040 Hb_010261_010--Hb_001269_040 Hb_001565_020 Hb_001565_020 Hb_153161_010--Hb_001565_020 Hb_153161_010--Hb_178127_010 Hb_128695_030 Hb_128695_030 Hb_153161_010--Hb_128695_030 Hb_021530_010 Hb_021530_010 Hb_153161_010--Hb_021530_010 Hb_002942_110 Hb_002942_110 Hb_153161_010--Hb_002942_110 Hb_000599_130 Hb_000599_130 Hb_000175_350--Hb_000599_130 Hb_000979_240 Hb_000979_240 Hb_000175_350--Hb_000979_240 Hb_000175_350--Hb_178127_010 Hb_000120_420 Hb_000120_420 Hb_000175_350--Hb_000120_420 Hb_000175_350--Hb_005333_030 Hb_000120_520 Hb_000120_520 Hb_000175_350--Hb_000120_520 Hb_178127_010--Hb_001565_020 Hb_178127_010--Hb_128695_030 Hb_005000_300 Hb_005000_300 Hb_178127_010--Hb_005000_300 Hb_178127_010--Hb_000120_420 Hb_018301_010 Hb_018301_010 Hb_178127_010--Hb_018301_010 Hb_011909_060 Hb_011909_060 Hb_178127_010--Hb_011909_060 Hb_057451_010 Hb_057451_010 Hb_005510_010--Hb_057451_010 Hb_018133_030 Hb_018133_030 Hb_005510_010--Hb_018133_030 Hb_005510_010--Hb_009028_030 Hb_001522_010 Hb_001522_010 Hb_005510_010--Hb_001522_010 Hb_003157_010 Hb_003157_010 Hb_005510_010--Hb_003157_010 Hb_000720_070 Hb_000720_070 Hb_005510_010--Hb_000720_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
126.126 266.904 49.9935 58.8236 175.011 84.7521
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.68694 4.04326 14.0187 86.6666 14.2666

CAGE analysis