Hb_001565_020

Information

Type -
Description -
Location Contig1565: 27992-28984
Sequence    

Annotation

kegg
ID psoj:PHYSODRAFT_311120
description hypothetical protein
nr
ID XP_012092818.1
description PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial, partial [Jatropha curcas]
swissprot
ID Q29NG1
description Putative oxidoreductase GLYR1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA18401 PE=3 SV=2
trembl
ID G4YZ68
description Putative uncharacterized protein OS=Phytophthora sojae (strain P6497) GN=PHYSODRAFT_311120 PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable 3-hydroxyisobutyrate dehydrogenase-like mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13605: 27800-28960
cDNA
(Sanger)
(ID:Location)		 024_J17.ab1: 28316-28960 , 026_O07.ab1: 28339-28662 , 027_G17.ab1: 28341-28960 , 038_H09.ab1: 27814-28654

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001565_020 0.0 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial, partial [Jatropha curcas]
2 Hb_178127_010 0.0801359077 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]
3 Hb_128695_030 0.089768533 - - heat shock protein, putative [Ricinus communis]
4 Hb_001454_220 0.1215661237 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
5 Hb_000422_110 0.1220546122 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
6 Hb_001565_060 0.1283053508 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial [Jatropha curcas]
7 Hb_153161_010 0.128445607 - - phospholipid-transporting atpase, putative [Ricinus communis]
8 Hb_003228_030 0.1336624073 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
9 Hb_000056_300 0.1375133035 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
10 Hb_003018_040 0.1436844479 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
11 Hb_002073_280 0.144878992 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
12 Hb_002942_110 0.1471432739 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
13 Hb_018301_010 0.1475804818 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
14 Hb_000024_120 0.148457428 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
15 Hb_013749_020 0.1485400853 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
16 Hb_012038_010 0.1487146238 - - phospholipid-transporting atpase, putative [Ricinus communis]
17 Hb_026198_040 0.1518050553 - - PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]
18 Hb_005054_310 0.1519195457 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
19 Hb_021576_140 0.1520017097 - - PREDICTED: protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION-like [Jatropha curcas]
20 Hb_005000_300 0.1532122225 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001565_020 Hb_001565_020 Hb_178127_010 Hb_178127_010 Hb_001565_020--Hb_178127_010 Hb_128695_030 Hb_128695_030 Hb_001565_020--Hb_128695_030 Hb_001454_220 Hb_001454_220 Hb_001565_020--Hb_001454_220 Hb_000422_110 Hb_000422_110 Hb_001565_020--Hb_000422_110 Hb_001565_060 Hb_001565_060 Hb_001565_020--Hb_001565_060 Hb_153161_010 Hb_153161_010 Hb_001565_020--Hb_153161_010 Hb_178127_010--Hb_128695_030 Hb_005000_300 Hb_005000_300 Hb_178127_010--Hb_005000_300 Hb_000120_420 Hb_000120_420 Hb_178127_010--Hb_000120_420 Hb_018301_010 Hb_018301_010 Hb_178127_010--Hb_018301_010 Hb_011909_060 Hb_011909_060 Hb_178127_010--Hb_011909_060 Hb_000056_300 Hb_000056_300 Hb_128695_030--Hb_000056_300 Hb_002942_110 Hb_002942_110 Hb_128695_030--Hb_002942_110 Hb_005054_310 Hb_005054_310 Hb_128695_030--Hb_005054_310 Hb_000836_370 Hb_000836_370 Hb_128695_030--Hb_000836_370 Hb_000024_120 Hb_000024_120 Hb_001454_220--Hb_000024_120 Hb_002073_280 Hb_002073_280 Hb_001454_220--Hb_002073_280 Hb_002902_020 Hb_002902_020 Hb_001454_220--Hb_002902_020 Hb_000345_490 Hb_000345_490 Hb_001454_220--Hb_000345_490 Hb_000230_430 Hb_000230_430 Hb_001454_220--Hb_000230_430 Hb_007576_220 Hb_007576_220 Hb_001454_220--Hb_007576_220 Hb_013749_020 Hb_013749_020 Hb_000422_110--Hb_013749_020 Hb_007813_030 Hb_007813_030 Hb_000422_110--Hb_007813_030 Hb_000422_110--Hb_002073_280 Hb_030827_060 Hb_030827_060 Hb_000422_110--Hb_030827_060 Hb_000574_510 Hb_000574_510 Hb_000422_110--Hb_000574_510 Hb_000544_060 Hb_000544_060 Hb_000422_110--Hb_000544_060 Hb_003089_030 Hb_003089_030 Hb_001565_060--Hb_003089_030 Hb_000122_220 Hb_000122_220 Hb_001565_060--Hb_000122_220 Hb_001565_060--Hb_128695_030 Hb_001565_060--Hb_001454_220 Hb_000343_150 Hb_000343_150 Hb_001565_060--Hb_000343_150 Hb_153161_010--Hb_178127_010 Hb_153161_010--Hb_128695_030 Hb_021530_010 Hb_021530_010 Hb_153161_010--Hb_021530_010 Hb_003096_040 Hb_003096_040 Hb_153161_010--Hb_003096_040 Hb_153161_010--Hb_002942_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.6025 178.321 77.7909 44.3624 105.762 44.8645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.39023 10.9765 30.6983 26.0204 28.4453

CAGE analysis