Hb_178127_010

Information

Type -
Description -
Location Contig178127: 582-1232
Sequence    

Annotation

kegg
ID rcu:RCOM_0718310
description Ubiquitin ligase SINAT3, putative
nr
ID XP_002523339.1
description Ubiquitin ligase SINAT3, putative [Ricinus communis]
swissprot
ID Q84JL3
description E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1
trembl
ID B9SBH0
description E3 ubiquitin-protein ligase OS=Ricinus communis GN=RCOM_0718310 PE=3 SV=1
Gene Ontology
ID GO:0005634
description ubiquitin ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178127_010 0.0 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]
2 Hb_001565_020 0.0801359077 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial, partial [Jatropha curcas]
3 Hb_128695_030 0.0882903844 - - heat shock protein, putative [Ricinus communis]
4 Hb_005000_300 0.1068559527 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
5 Hb_000120_420 0.110518072 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
6 Hb_018301_010 0.1127261652 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
7 Hb_011909_060 0.1136821401 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
8 Hb_000422_110 0.1137443828 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
9 Hb_000175_350 0.1151829362 - - phopholipase d alpha, putative [Ricinus communis]
10 Hb_003228_030 0.1172551706 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
11 Hb_000056_300 0.1172981945 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
12 Hb_026198_040 0.119806386 - - PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]
13 Hb_000836_370 0.1214681671 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
14 Hb_000465_080 0.1242306997 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
15 Hb_167381_020 0.1256781803 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
16 Hb_009771_100 0.1259673574 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
17 Hb_005054_310 0.1275522193 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
18 Hb_001307_010 0.1282815889 - - PREDICTED: uncharacterized protein LOC103939917 [Pyrus x bretschneideri]
19 Hb_000152_640 0.1289323525 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
20 Hb_153161_010 0.1291858262 - - phospholipid-transporting atpase, putative [Ricinus communis]

Gene co-expression network

sample Hb_178127_010 Hb_178127_010 Hb_001565_020 Hb_001565_020 Hb_178127_010--Hb_001565_020 Hb_128695_030 Hb_128695_030 Hb_178127_010--Hb_128695_030 Hb_005000_300 Hb_005000_300 Hb_178127_010--Hb_005000_300 Hb_000120_420 Hb_000120_420 Hb_178127_010--Hb_000120_420 Hb_018301_010 Hb_018301_010 Hb_178127_010--Hb_018301_010 Hb_011909_060 Hb_011909_060 Hb_178127_010--Hb_011909_060 Hb_001565_020--Hb_128695_030 Hb_001454_220 Hb_001454_220 Hb_001565_020--Hb_001454_220 Hb_000422_110 Hb_000422_110 Hb_001565_020--Hb_000422_110 Hb_001565_060 Hb_001565_060 Hb_001565_020--Hb_001565_060 Hb_153161_010 Hb_153161_010 Hb_001565_020--Hb_153161_010 Hb_000056_300 Hb_000056_300 Hb_128695_030--Hb_000056_300 Hb_002942_110 Hb_002942_110 Hb_128695_030--Hb_002942_110 Hb_005054_310 Hb_005054_310 Hb_128695_030--Hb_005054_310 Hb_000836_370 Hb_000836_370 Hb_128695_030--Hb_000836_370 Hb_005000_300--Hb_000836_370 Hb_000465_080 Hb_000465_080 Hb_005000_300--Hb_000465_080 Hb_005000_300--Hb_000056_300 Hb_003078_030 Hb_003078_030 Hb_005000_300--Hb_003078_030 Hb_001231_080 Hb_001231_080 Hb_005000_300--Hb_001231_080 Hb_005000_300--Hb_005054_310 Hb_000120_420--Hb_011909_060 Hb_000363_280 Hb_000363_280 Hb_000120_420--Hb_000363_280 Hb_000227_310 Hb_000227_310 Hb_000120_420--Hb_000227_310 Hb_000264_080 Hb_000264_080 Hb_000120_420--Hb_000264_080 Hb_167381_020 Hb_167381_020 Hb_000120_420--Hb_167381_020 Hb_003430_030 Hb_003430_030 Hb_000120_420--Hb_003430_030 Hb_006683_040 Hb_006683_040 Hb_018301_010--Hb_006683_040 Hb_004218_090 Hb_004218_090 Hb_018301_010--Hb_004218_090 Hb_012114_050 Hb_012114_050 Hb_018301_010--Hb_012114_050 Hb_018301_010--Hb_000264_080 Hb_018301_010--Hb_000120_420 Hb_007193_110 Hb_007193_110 Hb_018301_010--Hb_007193_110 Hb_011909_060--Hb_000363_280 Hb_009771_100 Hb_009771_100 Hb_011909_060--Hb_009771_100 Hb_031711_010 Hb_031711_010 Hb_011909_060--Hb_031711_010 Hb_001141_370 Hb_001141_370 Hb_011909_060--Hb_001141_370 Hb_002997_160 Hb_002997_160 Hb_011909_060--Hb_002997_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.2052 158.539 52.797 40.602 74.8184 46.5091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5426 9.99432 20.1714 22.8642 17.8454

CAGE analysis