Hb_012404_040

Information

Type -
Description -
Location Contig12404: 74643-88281
Sequence    

Annotation

kegg
ID rcu:RCOM_0022940
description starch branching enzyme II, putative (EC:2.4.1.18)
nr
ID XP_012066451.1
description PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]
swissprot
ID Q41058
description 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic OS=Pisum sativum GN=SBEI PE=1 SV=1
trembl
ID A0A067L2P8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23646 PE=4 SV=1
Gene Ontology
ID GO:0004553
description starch branching enzyme isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012404_040 0.0 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]
2 Hb_010261_010 0.1722891572 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
3 Hb_000640_150 0.1748534727 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
4 Hb_001269_040 0.1785531898 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_001351_040 0.2143102238 - - PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Jatropha curcas]
6 Hb_009848_030 0.2177284557 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
7 Hb_015388_030 0.2202975249 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_003633_140 0.2259443529 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
9 Hb_000315_030 0.2289011228 - - carbohydrate binding protein, putative [Ricinus communis]
10 Hb_000032_310 0.245085482 - - ring finger protein, putative [Ricinus communis]
11 Hb_025194_010 0.2469160687 - - PREDICTED: uncharacterized protein LOC105644857 [Jatropha curcas]
12 Hb_028795_010 0.2514864588 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
13 Hb_003656_120 0.2519816897 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]
14 Hb_003096_040 0.2566804406 transcription factor TF Family: HB hypothetical protein POPTR_0005s07290g [Populus trichocarpa]
15 Hb_003525_020 0.2571601187 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004976_060 0.257545268 - - -
17 Hb_181975_010 0.2580836737 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
18 Hb_031089_030 0.259073897 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
19 Hb_001907_100 0.259935425 - - PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
20 Hb_007144_010 0.2602302819 - - -

Gene co-expression network

sample Hb_012404_040 Hb_012404_040 Hb_010261_010 Hb_010261_010 Hb_012404_040--Hb_010261_010 Hb_000640_150 Hb_000640_150 Hb_012404_040--Hb_000640_150 Hb_001269_040 Hb_001269_040 Hb_012404_040--Hb_001269_040 Hb_001351_040 Hb_001351_040 Hb_012404_040--Hb_001351_040 Hb_009848_030 Hb_009848_030 Hb_012404_040--Hb_009848_030 Hb_015388_030 Hb_015388_030 Hb_012404_040--Hb_015388_030 Hb_003096_040 Hb_003096_040 Hb_010261_010--Hb_003096_040 Hb_003633_140 Hb_003633_140 Hb_010261_010--Hb_003633_140 Hb_003525_020 Hb_003525_020 Hb_010261_010--Hb_003525_020 Hb_000538_190 Hb_000538_190 Hb_010261_010--Hb_000538_190 Hb_010261_010--Hb_001269_040 Hb_000270_210 Hb_000270_210 Hb_000640_150--Hb_000270_210 Hb_000003_390 Hb_000003_390 Hb_000640_150--Hb_000003_390 Hb_007846_040 Hb_007846_040 Hb_000640_150--Hb_007846_040 Hb_000640_150--Hb_010261_010 Hb_003157_010 Hb_003157_010 Hb_000640_150--Hb_003157_010 Hb_002686_280 Hb_002686_280 Hb_001269_040--Hb_002686_280 Hb_002273_080 Hb_002273_080 Hb_001269_040--Hb_002273_080 Hb_002273_050 Hb_002273_050 Hb_001269_040--Hb_002273_050 Hb_001338_050 Hb_001338_050 Hb_001269_040--Hb_001338_050 Hb_025194_010 Hb_025194_010 Hb_001269_040--Hb_025194_010 Hb_000977_010 Hb_000977_010 Hb_001351_040--Hb_000977_010 Hb_010398_010 Hb_010398_010 Hb_001351_040--Hb_010398_010 Hb_000315_030 Hb_000315_030 Hb_001351_040--Hb_000315_030 Hb_048848_010 Hb_048848_010 Hb_001351_040--Hb_048848_010 Hb_003384_070 Hb_003384_070 Hb_001351_040--Hb_003384_070 Hb_003640_030 Hb_003640_030 Hb_001351_040--Hb_003640_030 Hb_000032_310 Hb_000032_310 Hb_009848_030--Hb_000032_310 Hb_001989_020 Hb_001989_020 Hb_009848_030--Hb_001989_020 Hb_001396_260 Hb_001396_260 Hb_009848_030--Hb_001396_260 Hb_000521_170 Hb_000521_170 Hb_009848_030--Hb_000521_170 Hb_003656_120 Hb_003656_120 Hb_009848_030--Hb_003656_120 Hb_009848_040 Hb_009848_040 Hb_009848_030--Hb_009848_040 Hb_015388_030--Hb_010261_010 Hb_000181_440 Hb_000181_440 Hb_015388_030--Hb_000181_440 Hb_015388_030--Hb_003096_040 Hb_015388_030--Hb_001269_040 Hb_015388_030--Hb_025194_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.46112 8.01402 0.10197 0.880265 2.46609 4.68983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0568567 0.014913 0 3.79193 0.348163

CAGE analysis