Hb_001338_050

Information

Type -
Description -
Location Contig1338: 88941-103919
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05400g
description POPTRDRAFT_907867; hypothetical protein
nr
ID XP_002322704.2
description hypothetical protein POPTR_0016s05400g [Populus trichocarpa]
swissprot
ID Q9SYD6
description MATE efflux family protein 1 OS=Arabidopsis thaliana GN=MATE PE=2 SV=2
trembl
ID B9II59
description MATE efflux family protein OS=Populus trichocarpa GN=POPTR_0016s05400g PE=3 SV=2
Gene Ontology
ID GO:0016020
description mate efflux family protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001338_050 0.0 - - hypothetical protein POPTR_0016s05400g [Populus trichocarpa]
2 Hb_001269_040 0.1788123297 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_025194_010 0.1879064279 - - PREDICTED: uncharacterized protein LOC105644857 [Jatropha curcas]
4 Hb_004976_060 0.2108281238 - - -
5 Hb_005157_010 0.2183140487 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
6 Hb_005841_080 0.2187840493 - - hypothetical protein POPTR_0018s11370g [Populus trichocarpa]
7 Hb_089920_010 0.2196468483 - - PREDICTED: LOW QUALITY PROTEIN: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
8 Hb_011885_010 0.22224432 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
9 Hb_002273_080 0.2244495884 - - geranylgeranyl reductase [Monoraphidium neglectum]
10 Hb_003175_020 0.2307869733 - - homeobox protein knotted-1, putative [Ricinus communis]
11 Hb_007144_010 0.238930391 - - -
12 Hb_151671_010 0.2468454478 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
13 Hb_009897_020 0.24699434 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
14 Hb_002686_280 0.2516054793 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
15 Hb_001250_110 0.2527182676 transcription factor TF Family: HB hypothetical protein POPTR_0010s05340g [Populus trichocarpa]
16 Hb_000567_080 0.2534615077 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
17 Hb_000215_410 0.2537856193 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
18 Hb_002686_400 0.2545161994 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
19 Hb_129204_060 0.2545826943 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
20 Hb_001544_080 0.2570948694 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_001338_050 Hb_001338_050 Hb_001269_040 Hb_001269_040 Hb_001338_050--Hb_001269_040 Hb_025194_010 Hb_025194_010 Hb_001338_050--Hb_025194_010 Hb_004976_060 Hb_004976_060 Hb_001338_050--Hb_004976_060 Hb_005157_010 Hb_005157_010 Hb_001338_050--Hb_005157_010 Hb_005841_080 Hb_005841_080 Hb_001338_050--Hb_005841_080 Hb_089920_010 Hb_089920_010 Hb_001338_050--Hb_089920_010 Hb_002686_280 Hb_002686_280 Hb_001269_040--Hb_002686_280 Hb_002273_080 Hb_002273_080 Hb_001269_040--Hb_002273_080 Hb_002273_050 Hb_002273_050 Hb_001269_040--Hb_002273_050 Hb_012404_040 Hb_012404_040 Hb_001269_040--Hb_012404_040 Hb_001269_040--Hb_025194_010 Hb_003175_020 Hb_003175_020 Hb_025194_010--Hb_003175_020 Hb_006738_060 Hb_006738_060 Hb_025194_010--Hb_006738_060 Hb_141142_010 Hb_141142_010 Hb_025194_010--Hb_141142_010 Hb_007144_010 Hb_007144_010 Hb_025194_010--Hb_007144_010 Hb_000538_190 Hb_000538_190 Hb_004976_060--Hb_000538_190 Hb_003525_020 Hb_003525_020 Hb_004976_060--Hb_003525_020 Hb_020178_060 Hb_020178_060 Hb_004976_060--Hb_020178_060 Hb_004976_040 Hb_004976_040 Hb_004976_060--Hb_004976_040 Hb_002903_130 Hb_002903_130 Hb_004976_060--Hb_002903_130 Hb_048848_010 Hb_048848_010 Hb_004976_060--Hb_048848_010 Hb_003299_010 Hb_003299_010 Hb_005157_010--Hb_003299_010 Hb_005157_010--Hb_005841_080 Hb_000685_060 Hb_000685_060 Hb_005157_010--Hb_000685_060 Hb_001951_030 Hb_001951_030 Hb_005157_010--Hb_001951_030 Hb_003504_040 Hb_003504_040 Hb_005157_010--Hb_003504_040 Hb_133636_010 Hb_133636_010 Hb_005157_010--Hb_133636_010 Hb_005841_080--Hb_000685_060 Hb_005841_080--Hb_003299_010 Hb_005841_080--Hb_002273_080 Hb_000215_410 Hb_000215_410 Hb_005841_080--Hb_000215_410 Hb_000106_070 Hb_000106_070 Hb_005841_080--Hb_000106_070 Hb_003371_120 Hb_003371_120 Hb_089920_010--Hb_003371_120 Hb_089920_010--Hb_001951_030 Hb_000997_110 Hb_000997_110 Hb_089920_010--Hb_000997_110 Hb_089920_010--Hb_002273_080 Hb_089920_010--Hb_005157_010 Hb_089920_010--Hb_000215_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.99643 14.7579 0.296902 0.369572 1.99601 2.25786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0469871 0.0184851 1.1206 4.7672 0.195117

CAGE analysis