Hb_025194_010

Information

Type -
Description -
Location Contig25194: 12847-13344
Sequence    

Annotation

kegg
ID pop:POPTR_0003s16580g
description POPTRDRAFT_817524; hypothetical protein
nr
ID XP_012085741.1
description PREDICTED: uncharacterized protein LOC105644857 [Jatropha curcas]
swissprot
ID Q9SGU2
description Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana GN=SAUR71 PE=2 SV=1
trembl
ID A0A067JSJ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18010 PE=4 SV=1
Gene Ontology
ID GO:0009733
description indole-3-acetic acid-induced protein arg7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26322: 12742-13122
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025194_010 0.0 - - PREDICTED: uncharacterized protein LOC105644857 [Jatropha curcas]
2 Hb_003175_020 0.1270786117 - - homeobox protein knotted-1, putative [Ricinus communis]
3 Hb_001269_040 0.1796695536 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_001338_050 0.1879064279 - - hypothetical protein POPTR_0016s05400g [Populus trichocarpa]
5 Hb_006738_060 0.1909215551 - - ATP binding protein, putative [Ricinus communis]
6 Hb_141142_010 0.1927622988 - - hypothetical protein JCGZ_21320 [Jatropha curcas]
7 Hb_007144_010 0.1989837995 - - -
8 Hb_005157_010 0.209453656 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
9 Hb_003525_020 0.2146241808 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003299_010 0.2188849405 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
11 Hb_124302_030 0.2199450617 - - PREDICTED: serine carboxypeptidase-like [Beta vulgaris subsp. vulgaris]
12 Hb_001544_080 0.2218523156 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
13 Hb_116635_010 0.2250045492 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
14 Hb_151671_010 0.2281385288 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
15 Hb_001351_040 0.2326097114 - - PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Jatropha curcas]
16 Hb_005841_080 0.2355966022 - - hypothetical protein POPTR_0018s11370g [Populus trichocarpa]
17 Hb_002686_400 0.2365973247 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
18 Hb_007618_010 0.2369755716 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
19 Hb_006026_010 0.2379802044 - - PREDICTED: cyclin-dependent kinase inhibitor 3-like [Jatropha curcas]
20 Hb_004976_060 0.2403825517 - - -

Gene co-expression network

sample Hb_025194_010 Hb_025194_010 Hb_003175_020 Hb_003175_020 Hb_025194_010--Hb_003175_020 Hb_001269_040 Hb_001269_040 Hb_025194_010--Hb_001269_040 Hb_001338_050 Hb_001338_050 Hb_025194_010--Hb_001338_050 Hb_006738_060 Hb_006738_060 Hb_025194_010--Hb_006738_060 Hb_141142_010 Hb_141142_010 Hb_025194_010--Hb_141142_010 Hb_007144_010 Hb_007144_010 Hb_025194_010--Hb_007144_010 Hb_124302_030 Hb_124302_030 Hb_003175_020--Hb_124302_030 Hb_003175_020--Hb_141142_010 Hb_133636_010 Hb_133636_010 Hb_003175_020--Hb_133636_010 Hb_003175_020--Hb_007144_010 Hb_101089_010 Hb_101089_010 Hb_003175_020--Hb_101089_010 Hb_002686_280 Hb_002686_280 Hb_001269_040--Hb_002686_280 Hb_002273_080 Hb_002273_080 Hb_001269_040--Hb_002273_080 Hb_002273_050 Hb_002273_050 Hb_001269_040--Hb_002273_050 Hb_012404_040 Hb_012404_040 Hb_001269_040--Hb_012404_040 Hb_001269_040--Hb_001338_050 Hb_004976_060 Hb_004976_060 Hb_001338_050--Hb_004976_060 Hb_005157_010 Hb_005157_010 Hb_001338_050--Hb_005157_010 Hb_005841_080 Hb_005841_080 Hb_001338_050--Hb_005841_080 Hb_089920_010 Hb_089920_010 Hb_001338_050--Hb_089920_010 Hb_002686_400 Hb_002686_400 Hb_006738_060--Hb_002686_400 Hb_000984_100 Hb_000984_100 Hb_006738_060--Hb_000984_100 Hb_057079_020 Hb_057079_020 Hb_006738_060--Hb_057079_020 Hb_007618_010 Hb_007618_010 Hb_006738_060--Hb_007618_010 Hb_000189_120 Hb_000189_120 Hb_006738_060--Hb_000189_120 Hb_001608_030 Hb_001608_030 Hb_006738_060--Hb_001608_030 Hb_000844_010 Hb_000844_010 Hb_141142_010--Hb_000844_010 Hb_003384_070 Hb_003384_070 Hb_141142_010--Hb_003384_070 Hb_141142_010--Hb_133636_010 Hb_141142_010--Hb_005157_010 Hb_007144_010--Hb_001269_040 Hb_007144_010--Hb_005157_010 Hb_002760_030 Hb_002760_030 Hb_007144_010--Hb_002760_030 Hb_007144_010--Hb_133636_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.54284 74.5514 0.0888194 9.45493 11.0816 10.3421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.810603 0.212271 0.359314 28.4696 1.58592

CAGE analysis