Hb_101089_010

Information

Type transcription factor
Description TF Family: HB
Location Contig101089: 2-831
Sequence    

Annotation

kegg
ID rcu:RCOM_0903280
description homeobox protein knotted-1, putative
nr
ID XP_002518420.1
description homeobox protein knotted-1, putative [Ricinus communis]
swissprot
ID O22299
description Homeobox protein knotted-1-like LET6 OS=Solanum lycopersicum GN=LET6 PE=2 SV=1
trembl
ID B9RXF1
description Homeobox protein knotted-1, putative OS=Ricinus communis GN=RCOM_0903280 PE=4 SV=1
Gene Ontology
ID GO:0005634
description knox elk homeobox transcription factor isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101089_010 0.0 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
2 Hb_011382_050 0.1689809173 - - hypothetical protein PRUPE_ppa025935mg [Prunus persica]
3 Hb_003384_070 0.1790629843 - - PREDICTED: methylesterase 17-like [Populus euphratica]
4 Hb_000844_010 0.1836449759 - - PREDICTED: lysine histidine transporter-like 8 [Jatropha curcas]
5 Hb_164010_090 0.1885369579 - - cellulose synthase, putative [Ricinus communis]
6 Hb_085327_010 0.1962326571 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
7 Hb_004341_010 0.198148287 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
8 Hb_141142_010 0.199591375 - - hypothetical protein JCGZ_21320 [Jatropha curcas]
9 Hb_002326_080 0.201476883 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
10 Hb_004041_080 0.2020524678 - - PREDICTED: uncharacterized protein LOC105639186 [Jatropha curcas]
11 Hb_003299_010 0.206095547 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
12 Hb_005380_040 0.2101389743 - - hypothetical protein PRUPE_ppa015877mg, partial [Prunus persica]
13 Hb_003175_020 0.2106692774 - - homeobox protein knotted-1, putative [Ricinus communis]
14 Hb_000141_220 0.2122437392 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
15 Hb_133636_010 0.2129797346 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
16 Hb_031954_010 0.2147876788 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000762_070 0.2205475572 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
18 Hb_000106_070 0.2215044729 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
19 Hb_004837_170 0.2234005059 - - PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas]
20 Hb_034337_010 0.2239330286 - - vesicle-associated membrane protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_101089_010 Hb_101089_010 Hb_011382_050 Hb_011382_050 Hb_101089_010--Hb_011382_050 Hb_003384_070 Hb_003384_070 Hb_101089_010--Hb_003384_070 Hb_000844_010 Hb_000844_010 Hb_101089_010--Hb_000844_010 Hb_164010_090 Hb_164010_090 Hb_101089_010--Hb_164010_090 Hb_085327_010 Hb_085327_010 Hb_101089_010--Hb_085327_010 Hb_004341_010 Hb_004341_010 Hb_101089_010--Hb_004341_010 Hb_011382_050--Hb_003384_070 Hb_000017_150 Hb_000017_150 Hb_011382_050--Hb_000017_150 Hb_001103_040 Hb_001103_040 Hb_011382_050--Hb_001103_040 Hb_141142_010 Hb_141142_010 Hb_011382_050--Hb_141142_010 Hb_004611_060 Hb_004611_060 Hb_011382_050--Hb_004611_060 Hb_003384_070--Hb_141142_010 Hb_001351_040 Hb_001351_040 Hb_003384_070--Hb_001351_040 Hb_000315_030 Hb_000315_030 Hb_003384_070--Hb_000315_030 Hb_000803_100 Hb_000803_100 Hb_003384_070--Hb_000803_100 Hb_000141_220 Hb_000141_220 Hb_000844_010--Hb_000141_220 Hb_017417_030 Hb_017417_030 Hb_000844_010--Hb_017417_030 Hb_000844_010--Hb_164010_090 Hb_000844_010--Hb_141142_010 Hb_135811_060 Hb_135811_060 Hb_000844_010--Hb_135811_060 Hb_133636_010 Hb_133636_010 Hb_000844_010--Hb_133636_010 Hb_164010_090--Hb_000141_220 Hb_004195_170 Hb_004195_170 Hb_164010_090--Hb_004195_170 Hb_005380_040 Hb_005380_040 Hb_164010_090--Hb_005380_040 Hb_017866_020 Hb_017866_020 Hb_164010_090--Hb_017866_020 Hb_000589_180 Hb_000589_180 Hb_164010_090--Hb_000589_180 Hb_004041_080 Hb_004041_080 Hb_085327_010--Hb_004041_080 Hb_005663_050 Hb_005663_050 Hb_085327_010--Hb_005663_050 Hb_000334_250 Hb_000334_250 Hb_085327_010--Hb_000334_250 Hb_001454_340 Hb_001454_340 Hb_085327_010--Hb_001454_340 Hb_009515_010 Hb_009515_010 Hb_085327_010--Hb_009515_010 Hb_033006_040 Hb_033006_040 Hb_085327_010--Hb_033006_040 Hb_031954_010 Hb_031954_010 Hb_004341_010--Hb_031954_010 Hb_004837_170 Hb_004837_170 Hb_004341_010--Hb_004837_170 Hb_002762_070 Hb_002762_070 Hb_004341_010--Hb_002762_070 Hb_000077_460 Hb_000077_460 Hb_004341_010--Hb_000077_460 Hb_028207_030 Hb_028207_030 Hb_004341_010--Hb_028207_030 Hb_001283_010 Hb_001283_010 Hb_004341_010--Hb_001283_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51174 25.3447 0.135167 12.0945 2.32118 4.33644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.131196 0 0.175108 25.7192 0

CAGE analysis