Hb_000803_100

Information

Type -
Description -
Location Contig803: 149641-154891
Sequence    

Annotation

kegg
ID rcu:RCOM_1578690
description hypothetical protein
nr
ID XP_012090038.1
description PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RIF3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1578690 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58885: 151796-152656 , PASA_asmbl_58886: 152697-153035 , PASA_asmbl_58887: 153328-153672 , PASA_asmbl_58888: 153727-153904
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000803_100 0.0 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
2 Hb_000189_120 0.1566234075 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
3 Hb_000657_030 0.1834351238 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
4 Hb_003384_070 0.1854587958 - - PREDICTED: methylesterase 17-like [Populus euphratica]
5 Hb_165130_010 0.1856462795 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
6 Hb_002739_060 0.1931045663 - - -
7 Hb_010253_020 0.1976758501 - - alcohol dehydrogenase, putative [Ricinus communis]
8 Hb_004195_170 0.197713803 - - ATP binding protein, putative [Ricinus communis]
9 Hb_001148_040 0.1984795978 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
10 Hb_000976_440 0.1987673838 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_000007_160 0.1995445687 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
12 Hb_011970_040 0.2016942898 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001584_010 0.2018033547 - - kelch repeat protein, putative [Ricinus communis]
14 Hb_141142_010 0.2033769477 - - hypothetical protein JCGZ_21320 [Jatropha curcas]
15 Hb_002609_150 0.204628818 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
16 Hb_117168_010 0.2055206805 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
17 Hb_000083_130 0.2072964085 - - hypothetical protein RCOM_0884570 [Ricinus communis]
18 Hb_000086_370 0.2084213468 - - Long-chain-alcohol oxidase FAO2 [Triticum urartu]
19 Hb_008175_030 0.2084840008 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
20 Hb_000977_010 0.210137194 - - endo-1,4-beta-glucanase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000803_100 Hb_000803_100 Hb_000189_120 Hb_000189_120 Hb_000803_100--Hb_000189_120 Hb_000657_030 Hb_000657_030 Hb_000803_100--Hb_000657_030 Hb_003384_070 Hb_003384_070 Hb_000803_100--Hb_003384_070 Hb_165130_010 Hb_165130_010 Hb_000803_100--Hb_165130_010 Hb_002739_060 Hb_002739_060 Hb_000803_100--Hb_002739_060 Hb_010253_020 Hb_010253_020 Hb_000803_100--Hb_010253_020 Hb_001584_010 Hb_001584_010 Hb_000189_120--Hb_001584_010 Hb_000778_020 Hb_000778_020 Hb_000189_120--Hb_000778_020 Hb_008175_030 Hb_008175_030 Hb_000189_120--Hb_008175_030 Hb_000189_120--Hb_010253_020 Hb_057079_020 Hb_057079_020 Hb_000189_120--Hb_057079_020 Hb_000007_160 Hb_000007_160 Hb_000189_120--Hb_000007_160 Hb_000086_370 Hb_000086_370 Hb_000657_030--Hb_000086_370 Hb_009581_040 Hb_009581_040 Hb_000657_030--Hb_009581_040 Hb_003430_020 Hb_003430_020 Hb_000657_030--Hb_003430_020 Hb_000085_230 Hb_000085_230 Hb_000657_030--Hb_000085_230 Hb_000579_180 Hb_000579_180 Hb_000657_030--Hb_000579_180 Hb_004195_170 Hb_004195_170 Hb_000657_030--Hb_004195_170 Hb_011382_050 Hb_011382_050 Hb_003384_070--Hb_011382_050 Hb_141142_010 Hb_141142_010 Hb_003384_070--Hb_141142_010 Hb_001351_040 Hb_001351_040 Hb_003384_070--Hb_001351_040 Hb_000315_030 Hb_000315_030 Hb_003384_070--Hb_000315_030 Hb_101089_010 Hb_101089_010 Hb_003384_070--Hb_101089_010 Hb_165130_010--Hb_000189_120 Hb_003576_050 Hb_003576_050 Hb_165130_010--Hb_003576_050 Hb_002660_100 Hb_002660_100 Hb_165130_010--Hb_002660_100 Hb_002928_180 Hb_002928_180 Hb_165130_010--Hb_002928_180 Hb_002928_120 Hb_002928_120 Hb_165130_010--Hb_002928_120 Hb_011310_200 Hb_011310_200 Hb_165130_010--Hb_011310_200 Hb_002739_060--Hb_008175_030 Hb_000532_130 Hb_000532_130 Hb_002739_060--Hb_000532_130 Hb_002739_060--Hb_000778_020 Hb_001408_150 Hb_001408_150 Hb_002739_060--Hb_001408_150 Hb_005880_010 Hb_005880_010 Hb_002739_060--Hb_005880_010 Hb_002609_150 Hb_002609_150 Hb_002739_060--Hb_002609_150 Hb_010253_020--Hb_000778_020 Hb_000083_130 Hb_000083_130 Hb_010253_020--Hb_000083_130 Hb_010253_020--Hb_057079_020 Hb_001071_060 Hb_001071_060 Hb_010253_020--Hb_001071_060 Hb_010253_020--Hb_002928_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.16798 5.98787 0.385223 1.97723 0.892932 0.156053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0153143 0 0.0690976 6.10087 0.590813

CAGE analysis