Hb_000017_150

Information

Type -
Description -
Location Contig17: 194501-195511
Sequence    

Annotation

kegg
ID pop:POPTR_0001s09780g
description hypothetical protein
nr
ID XP_002299512.1
description hypothetical protein POPTR_0001s09780g [Populus trichocarpa]
swissprot
ID B3H4F1
description Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1
trembl
ID B9GKD9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s09780g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15826: 194659-195299
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000017_150 0.0 - - hypothetical protein POPTR_0001s09780g [Populus trichocarpa]
2 Hb_011382_050 0.1665441762 - - hypothetical protein PRUPE_ppa025935mg [Prunus persica]
3 Hb_010398_010 0.2093350021 - - PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 15a-like [Malus domestica]
4 Hb_137914_010 0.2131925985 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
5 Hb_003384_070 0.2175923976 - - PREDICTED: methylesterase 17-like [Populus euphratica]
6 Hb_000152_460 0.2279163429 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
7 Hb_001103_040 0.230785673 - - hypothetical protein POPTR_0013s11170g [Populus trichocarpa]
8 Hb_141142_010 0.2323027525 - - hypothetical protein JCGZ_21320 [Jatropha curcas]
9 Hb_184705_010 0.2412492458 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
10 Hb_007785_010 0.2413676775 - - glutathione peroxidase, putative [Ricinus communis]
11 Hb_001544_080 0.2415231421 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
12 Hb_000189_120 0.2434881572 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
13 Hb_003107_020 0.2435925874 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
14 Hb_004453_180 0.2443253331 - - hypothetical protein JCGZ_07188 [Jatropha curcas]
15 Hb_115158_010 0.2469872997 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
16 Hb_048643_010 0.2485301638 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
17 Hb_048848_010 0.2489635016 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
18 Hb_165130_010 0.2526706375 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
19 Hb_004531_110 0.2557627481 - - PREDICTED: aquaporin TIP2-1 [Jatropha curcas]
20 Hb_001608_020 0.2582558465 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000017_150 Hb_000017_150 Hb_011382_050 Hb_011382_050 Hb_000017_150--Hb_011382_050 Hb_010398_010 Hb_010398_010 Hb_000017_150--Hb_010398_010 Hb_137914_010 Hb_137914_010 Hb_000017_150--Hb_137914_010 Hb_003384_070 Hb_003384_070 Hb_000017_150--Hb_003384_070 Hb_000152_460 Hb_000152_460 Hb_000017_150--Hb_000152_460 Hb_001103_040 Hb_001103_040 Hb_000017_150--Hb_001103_040 Hb_011382_050--Hb_003384_070 Hb_101089_010 Hb_101089_010 Hb_011382_050--Hb_101089_010 Hb_011382_050--Hb_001103_040 Hb_141142_010 Hb_141142_010 Hb_011382_050--Hb_141142_010 Hb_004611_060 Hb_004611_060 Hb_011382_050--Hb_004611_060 Hb_001608_020 Hb_001608_020 Hb_010398_010--Hb_001608_020 Hb_000362_090 Hb_000362_090 Hb_010398_010--Hb_000362_090 Hb_001351_040 Hb_001351_040 Hb_010398_010--Hb_001351_040 Hb_048848_010 Hb_048848_010 Hb_010398_010--Hb_048848_010 Hb_000120_970 Hb_000120_970 Hb_010398_010--Hb_000120_970 Hb_000107_560 Hb_000107_560 Hb_010398_010--Hb_000107_560 Hb_001491_060 Hb_001491_060 Hb_137914_010--Hb_001491_060 Hb_002588_020 Hb_002588_020 Hb_137914_010--Hb_002588_020 Hb_137914_010--Hb_010398_010 Hb_001477_040 Hb_001477_040 Hb_137914_010--Hb_001477_040 Hb_137914_010--Hb_001608_020 Hb_003384_070--Hb_141142_010 Hb_003384_070--Hb_001351_040 Hb_000315_030 Hb_000315_030 Hb_003384_070--Hb_000315_030 Hb_003384_070--Hb_101089_010 Hb_000803_100 Hb_000803_100 Hb_003384_070--Hb_000803_100 Hb_048643_010 Hb_048643_010 Hb_000152_460--Hb_048643_010 Hb_000025_400 Hb_000025_400 Hb_000152_460--Hb_000025_400 Hb_002928_120 Hb_002928_120 Hb_000152_460--Hb_002928_120 Hb_001900_060 Hb_001900_060 Hb_000152_460--Hb_001900_060 Hb_000083_130 Hb_000083_130 Hb_000152_460--Hb_000083_130 Hb_000000_110 Hb_000000_110 Hb_000152_460--Hb_000000_110 Hb_000189_490 Hb_000189_490 Hb_001103_040--Hb_000189_490 Hb_003442_010 Hb_003442_010 Hb_001103_040--Hb_003442_010 Hb_083493_020 Hb_083493_020 Hb_001103_040--Hb_083493_020 Hb_027506_050 Hb_027506_050 Hb_001103_040--Hb_027506_050 Hb_009913_010 Hb_009913_010 Hb_001103_040--Hb_009913_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
74.7892 327.484 19.3239 252.459 137.544 21.7588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.35416 4.23175 6.4547 183.978 2.0615

CAGE analysis