Hb_001477_040

Information

Type -
Description -
Location Contig1477: 34686-37988
Sequence    

Annotation

kegg
ID rcu:RCOM_1172150
description Receptor protein kinase CLAVATA1 precursor, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_012088210.1
description PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
swissprot
ID Q9SGP2
description Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1
trembl
ID A0A067JML5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25735 PE=3 SV=1
Gene Ontology
ID GO:0005622
description receptor-like protein kinase hsl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12057: 37500-37924
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001477_040 0.0 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
2 Hb_001608_020 0.1919496094 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_001079_030 0.2094450363 - - PREDICTED: splicing factor U2af small subunit B-like [Jatropha curcas]
4 Hb_000434_010 0.2143742305 - - PREDICTED: protein starmaker [Jatropha curcas]
5 Hb_010398_010 0.2341768131 - - PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 15a-like [Malus domestica]
6 Hb_000505_110 0.2373797604 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
7 Hb_000062_030 0.2456221212 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X2 [Jatropha curcas]
8 Hb_004296_010 0.2470393067 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
9 Hb_000649_270 0.2488241242 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
10 Hb_009193_110 0.2510179094 - - PREDICTED: wall-associated receptor kinase-like 1 isoform X1 [Jatropha curcas]
11 Hb_162280_010 0.2514874733 - - Phosphoprotein phosphatase isoform 2, partial [Theobroma cacao]
12 Hb_006618_040 0.2517185415 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
13 Hb_000302_300 0.2530188407 - - PREDICTED: heat shock protein 83 [Populus euphratica]
14 Hb_021254_010 0.2532887848 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
15 Hb_001004_120 0.2554057777 - - PREDICTED: receptor-like protein kinase HERK 1 isoform X2 [Jatropha curcas]
16 Hb_004800_240 0.2554192636 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
17 Hb_002804_030 0.2561025521 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
18 Hb_009674_080 0.2564286313 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
19 Hb_137914_010 0.2630947022 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
20 Hb_001079_070 0.2646873151 - - PREDICTED: elongation of fatty acids protein 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_001477_040 Hb_001477_040 Hb_001608_020 Hb_001608_020 Hb_001477_040--Hb_001608_020 Hb_001079_030 Hb_001079_030 Hb_001477_040--Hb_001079_030 Hb_000434_010 Hb_000434_010 Hb_001477_040--Hb_000434_010 Hb_010398_010 Hb_010398_010 Hb_001477_040--Hb_010398_010 Hb_000505_110 Hb_000505_110 Hb_001477_040--Hb_000505_110 Hb_000062_030 Hb_000062_030 Hb_001477_040--Hb_000062_030 Hb_001608_020--Hb_010398_010 Hb_000362_090 Hb_000362_090 Hb_001608_020--Hb_000362_090 Hb_004800_240 Hb_004800_240 Hb_001608_020--Hb_004800_240 Hb_048848_010 Hb_048848_010 Hb_001608_020--Hb_048848_010 Hb_004126_080 Hb_004126_080 Hb_001608_020--Hb_004126_080 Hb_009193_110 Hb_009193_110 Hb_001608_020--Hb_009193_110 Hb_001409_050 Hb_001409_050 Hb_001079_030--Hb_001409_050 Hb_001079_030--Hb_009193_110 Hb_001196_080 Hb_001196_080 Hb_001079_030--Hb_001196_080 Hb_000139_180 Hb_000139_180 Hb_001079_030--Hb_000139_180 Hb_012038_010 Hb_012038_010 Hb_001079_030--Hb_012038_010 Hb_069841_010 Hb_069841_010 Hb_001079_030--Hb_069841_010 Hb_000922_220 Hb_000922_220 Hb_000434_010--Hb_000922_220 Hb_004875_010 Hb_004875_010 Hb_000434_010--Hb_004875_010 Hb_005181_040 Hb_005181_040 Hb_000434_010--Hb_005181_040 Hb_009674_080 Hb_009674_080 Hb_000434_010--Hb_009674_080 Hb_002804_030 Hb_002804_030 Hb_000434_010--Hb_002804_030 Hb_003216_060 Hb_003216_060 Hb_000434_010--Hb_003216_060 Hb_010398_010--Hb_000362_090 Hb_001351_040 Hb_001351_040 Hb_010398_010--Hb_001351_040 Hb_010398_010--Hb_048848_010 Hb_000120_970 Hb_000120_970 Hb_010398_010--Hb_000120_970 Hb_000107_560 Hb_000107_560 Hb_010398_010--Hb_000107_560 Hb_000505_110--Hb_000062_030 Hb_000599_170 Hb_000599_170 Hb_000505_110--Hb_000599_170 Hb_008147_050 Hb_008147_050 Hb_000505_110--Hb_008147_050 Hb_001051_090 Hb_001051_090 Hb_000505_110--Hb_001051_090 Hb_004884_030 Hb_004884_030 Hb_000505_110--Hb_004884_030 Hb_013818_030 Hb_013818_030 Hb_000505_110--Hb_013818_030 Hb_000366_190 Hb_000366_190 Hb_000062_030--Hb_000366_190 Hb_000062_030--Hb_008147_050 Hb_001031_040 Hb_001031_040 Hb_000062_030--Hb_001031_040 Hb_000062_030--Hb_013818_030 Hb_186857_010 Hb_186857_010 Hb_000062_030--Hb_186857_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.549196 4.4726 1.75007 2.79946 7.38934 0.730928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0136544 0.0967059 0.0205736 2.96951 2.1113

CAGE analysis