Hb_000434_010

Information

Type -
Description -
Location Contig434: 5248-15725
Sequence    

Annotation

kegg
ID pop:POPTR_0011s11660g
description POPTRDRAFT_660905; hypothetical protein
nr
ID XP_012076402.1
description PREDICTED: protein starmaker [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LN41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15313 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42406: 11577-12048
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000434_010 0.0 - - PREDICTED: protein starmaker [Jatropha curcas]
2 Hb_000922_220 0.1181789552 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
3 Hb_004875_010 0.1275923994 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
4 Hb_005181_040 0.1401118411 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
5 Hb_009674_080 0.1407993422 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
6 Hb_002804_030 0.1431498458 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
7 Hb_003216_060 0.1433236469 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
8 Hb_001411_030 0.1452848741 - - hypothetical protein POPTR_0003s09620g [Populus trichocarpa]
9 Hb_003470_070 0.1526294095 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
10 Hb_000732_070 0.1578383263 - - PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
11 Hb_000334_130 0.1607203955 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
12 Hb_003120_070 0.1621915563 - - ATP binding protein, putative [Ricinus communis]
13 Hb_001232_100 0.1635191722 - - Heat shock 70 kDa protein, putative [Ricinus communis]
14 Hb_001488_210 0.163644186 - - PREDICTED: protein RIK [Jatropha curcas]
15 Hb_002400_230 0.1658065443 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
16 Hb_004294_020 0.1660174101 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
17 Hb_000133_090 0.1668075704 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
18 Hb_014720_020 0.1675021494 - - PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
19 Hb_001073_030 0.1678763412 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
20 Hb_044486_040 0.1678946343 - - PREDICTED: ion channel CASTOR-like [Malus domestica]

Gene co-expression network

sample Hb_000434_010 Hb_000434_010 Hb_000922_220 Hb_000922_220 Hb_000434_010--Hb_000922_220 Hb_004875_010 Hb_004875_010 Hb_000434_010--Hb_004875_010 Hb_005181_040 Hb_005181_040 Hb_000434_010--Hb_005181_040 Hb_009674_080 Hb_009674_080 Hb_000434_010--Hb_009674_080 Hb_002804_030 Hb_002804_030 Hb_000434_010--Hb_002804_030 Hb_003216_060 Hb_003216_060 Hb_000434_010--Hb_003216_060 Hb_000922_220--Hb_004875_010 Hb_122273_020 Hb_122273_020 Hb_000922_220--Hb_122273_020 Hb_000922_220--Hb_002804_030 Hb_002918_320 Hb_002918_320 Hb_000922_220--Hb_002918_320 Hb_172421_010 Hb_172421_010 Hb_000922_220--Hb_172421_010 Hb_014720_030 Hb_014720_030 Hb_004875_010--Hb_014720_030 Hb_004875_010--Hb_122273_020 Hb_000649_270 Hb_000649_270 Hb_004875_010--Hb_000649_270 Hb_002005_030 Hb_002005_030 Hb_004875_010--Hb_002005_030 Hb_005772_030 Hb_005772_030 Hb_004875_010--Hb_005772_030 Hb_000086_150 Hb_000086_150 Hb_005181_040--Hb_000086_150 Hb_001040_070 Hb_001040_070 Hb_005181_040--Hb_001040_070 Hb_000243_130 Hb_000243_130 Hb_005181_040--Hb_000243_130 Hb_003470_070 Hb_003470_070 Hb_005181_040--Hb_003470_070 Hb_009486_080 Hb_009486_080 Hb_005181_040--Hb_009486_080 Hb_002461_020 Hb_002461_020 Hb_005181_040--Hb_002461_020 Hb_012038_010 Hb_012038_010 Hb_009674_080--Hb_012038_010 Hb_000526_060 Hb_000526_060 Hb_009674_080--Hb_000526_060 Hb_003120_070 Hb_003120_070 Hb_009674_080--Hb_003120_070 Hb_000117_070 Hb_000117_070 Hb_009674_080--Hb_000117_070 Hb_120470_010 Hb_120470_010 Hb_009674_080--Hb_120470_010 Hb_012753_040 Hb_012753_040 Hb_009674_080--Hb_012753_040 Hb_001073_030 Hb_001073_030 Hb_002804_030--Hb_001073_030 Hb_010921_020 Hb_010921_020 Hb_002804_030--Hb_010921_020 Hb_002804_030--Hb_004875_010 Hb_000631_140 Hb_000631_140 Hb_002804_030--Hb_000631_140 Hb_002686_410 Hb_002686_410 Hb_003216_060--Hb_002686_410 Hb_001488_210 Hb_001488_210 Hb_003216_060--Hb_001488_210 Hb_010775_010 Hb_010775_010 Hb_003216_060--Hb_010775_010 Hb_000260_760 Hb_000260_760 Hb_003216_060--Hb_000260_760 Hb_006794_020 Hb_006794_020 Hb_003216_060--Hb_006794_020 Hb_013358_060 Hb_013358_060 Hb_003216_060--Hb_013358_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.662786 4.43108 2.38617 2.269 3.5917 1.07047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.249081 0.552318 0.2027 2.35337 3.72733

CAGE analysis