Hb_001073_030

Information

Type -
Description -
Location Contig1073: 7653-11524
Sequence    

Annotation

kegg
ID rcu:RCOM_1503530
description translation factor sui1, putative
nr
ID XP_012090580.1
description PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
swissprot
ID Q9FH50
description APO protein 3, mitochondrial OS=Arabidopsis thaliana GN=APO3 PE=2 SV=1
trembl
ID A0A067JRB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26366 PE=4 SV=1
Gene Ontology
ID GO:0003723
description apo protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02295: 7890-11605
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001073_030 0.0 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
2 Hb_000175_270 0.1454339939 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
3 Hb_000438_020 0.1497672109 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
4 Hb_000418_150 0.1517043892 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_010921_020 0.1527634224 - - PREDICTED: cyclin-SDS [Jatropha curcas]
6 Hb_000221_180 0.1564529765 - - VQ motif-containing family protein [Populus trichocarpa]
7 Hb_000922_220 0.1574592095 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
8 Hb_002804_030 0.158469006 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
9 Hb_001408_020 0.1662892282 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
10 Hb_000434_010 0.1678763412 - - PREDICTED: protein starmaker [Jatropha curcas]
11 Hb_187005_010 0.1678885063 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
12 Hb_001496_120 0.1718213677 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
13 Hb_061908_020 0.1741021423 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
14 Hb_073973_020 0.1744269697 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
15 Hb_000321_120 0.1762315695 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
16 Hb_083078_010 0.1764496564 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
17 Hb_115513_040 0.1766665792 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000243_400 0.1769037653 - - PREDICTED: nucleolin-like [Jatropha curcas]
19 Hb_122273_020 0.1787621705 transcription factor TF Family: RWP-RK PREDICTED: protein NLP2 [Jatropha curcas]
20 Hb_000996_160 0.1790081801 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001073_030 Hb_001073_030 Hb_000175_270 Hb_000175_270 Hb_001073_030--Hb_000175_270 Hb_000438_020 Hb_000438_020 Hb_001073_030--Hb_000438_020 Hb_000418_150 Hb_000418_150 Hb_001073_030--Hb_000418_150 Hb_010921_020 Hb_010921_020 Hb_001073_030--Hb_010921_020 Hb_000221_180 Hb_000221_180 Hb_001073_030--Hb_000221_180 Hb_000922_220 Hb_000922_220 Hb_001073_030--Hb_000922_220 Hb_187005_010 Hb_187005_010 Hb_000175_270--Hb_187005_010 Hb_001499_070 Hb_001499_070 Hb_000175_270--Hb_001499_070 Hb_000175_270--Hb_000221_180 Hb_014006_010 Hb_014006_010 Hb_000175_270--Hb_014006_010 Hb_019863_060 Hb_019863_060 Hb_000175_270--Hb_019863_060 Hb_000340_360 Hb_000340_360 Hb_000175_270--Hb_000340_360 Hb_002099_060 Hb_002099_060 Hb_000438_020--Hb_002099_060 Hb_000438_020--Hb_000418_150 Hb_029748_020 Hb_029748_020 Hb_000438_020--Hb_029748_020 Hb_003177_090 Hb_003177_090 Hb_000438_020--Hb_003177_090 Hb_001307_200 Hb_001307_200 Hb_000438_020--Hb_001307_200 Hb_001689_030 Hb_001689_030 Hb_000438_020--Hb_001689_030 Hb_000757_020 Hb_000757_020 Hb_000418_150--Hb_000757_020 Hb_004864_020 Hb_004864_020 Hb_000418_150--Hb_004864_020 Hb_000418_150--Hb_003177_090 Hb_001496_120 Hb_001496_120 Hb_000418_150--Hb_001496_120 Hb_000418_150--Hb_002099_060 Hb_010921_020--Hb_000922_220 Hb_010921_020--Hb_000175_270 Hb_000032_020 Hb_000032_020 Hb_010921_020--Hb_000032_020 Hb_005183_140 Hb_005183_140 Hb_010921_020--Hb_005183_140 Hb_000320_360 Hb_000320_360 Hb_010921_020--Hb_000320_360 Hb_000221_180--Hb_014006_010 Hb_073973_020 Hb_073973_020 Hb_000221_180--Hb_073973_020 Hb_000221_180--Hb_001496_120 Hb_000221_180--Hb_001307_200 Hb_013399_090 Hb_013399_090 Hb_000221_180--Hb_013399_090 Hb_004875_010 Hb_004875_010 Hb_000922_220--Hb_004875_010 Hb_122273_020 Hb_122273_020 Hb_000922_220--Hb_122273_020 Hb_002804_030 Hb_002804_030 Hb_000922_220--Hb_002804_030 Hb_000434_010 Hb_000434_010 Hb_000922_220--Hb_000434_010 Hb_002918_320 Hb_002918_320 Hb_000922_220--Hb_002918_320 Hb_172421_010 Hb_172421_010 Hb_000922_220--Hb_172421_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.18763 4.34987 1.85422 1.86717 1.30596 0.738259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.208415 0.245871 0 2.60517 3.68263

CAGE analysis