Hb_003216_060

Information

Type -
Description -
Location Contig3216: 61201-67439
Sequence    

Annotation

kegg
ID rcu:RCOM_0483320
description heat shock protein, putative
nr
ID XP_012081434.1
description PREDICTED: heat shock protein 83 [Jatropha curcas]
swissprot
ID P24724
description Heat shock protein 90 OS=Theileria parva GN=TP02_0244 PE=2 SV=2
trembl
ID A0A067K4D4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18477 PE=3 SV=1
Gene Ontology
ID GO:0005618
description heat shock protein 83

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33995: 61120-67505 , PASA_asmbl_34001: 56656-104131
cDNA
(Sanger)
(ID:Location)		 016_G04.ab1: 65187-67501

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003216_060 0.0 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
2 Hb_002686_410 0.0931112051 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
3 Hb_001488_210 0.0974215434 - - PREDICTED: protein RIK [Jatropha curcas]
4 Hb_010775_010 0.0993978683 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
5 Hb_000260_760 0.1003914747 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
6 Hb_006794_020 0.1017846428 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
7 Hb_013358_060 0.1040218879 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
8 Hb_159295_010 0.1046956835 - - hypothetical protein RCOM_1520720 [Ricinus communis]
9 Hb_000331_100 0.1053335426 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
10 Hb_017914_010 0.1074600327 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
11 Hb_000270_700 0.1094819194 - - PREDICTED: protease Do-like 9 [Populus euphratica]
12 Hb_000030_140 0.1095173915 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
13 Hb_000428_030 0.1098841723 - - hypothetical protein RCOM_1520720 [Ricinus communis]
14 Hb_143629_020 0.1099715874 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
15 Hb_005885_030 0.111115575 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
16 Hb_009178_010 0.112561277 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
17 Hb_000034_110 0.1132462318 - - sentrin/sumo-specific protease, putative [Ricinus communis]
18 Hb_000613_220 0.1145227981 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
19 Hb_000172_360 0.116849793 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
20 Hb_003725_010 0.1189025396 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]

Gene co-expression network

sample Hb_003216_060 Hb_003216_060 Hb_002686_410 Hb_002686_410 Hb_003216_060--Hb_002686_410 Hb_001488_210 Hb_001488_210 Hb_003216_060--Hb_001488_210 Hb_010775_010 Hb_010775_010 Hb_003216_060--Hb_010775_010 Hb_000260_760 Hb_000260_760 Hb_003216_060--Hb_000260_760 Hb_006794_020 Hb_006794_020 Hb_003216_060--Hb_006794_020 Hb_013358_060 Hb_013358_060 Hb_003216_060--Hb_013358_060 Hb_009178_010 Hb_009178_010 Hb_002686_410--Hb_009178_010 Hb_005885_030 Hb_005885_030 Hb_002686_410--Hb_005885_030 Hb_000270_700 Hb_000270_700 Hb_002686_410--Hb_000270_700 Hb_000034_110 Hb_000034_110 Hb_002686_410--Hb_000034_110 Hb_009158_060 Hb_009158_060 Hb_002686_410--Hb_009158_060 Hb_000030_140 Hb_000030_140 Hb_002686_410--Hb_000030_140 Hb_001488_210--Hb_010775_010 Hb_002553_010 Hb_002553_010 Hb_001488_210--Hb_002553_010 Hb_000300_250 Hb_000300_250 Hb_001488_210--Hb_000300_250 Hb_001488_210--Hb_002686_410 Hb_000453_230 Hb_000453_230 Hb_001488_210--Hb_000453_230 Hb_010775_010--Hb_005885_030 Hb_010775_010--Hb_013358_060 Hb_010775_010--Hb_006794_020 Hb_001133_090 Hb_001133_090 Hb_010775_010--Hb_001133_090 Hb_010775_010--Hb_002686_410 Hb_000260_760--Hb_000030_140 Hb_002461_020 Hb_002461_020 Hb_000260_760--Hb_002461_020 Hb_000428_030 Hb_000428_030 Hb_000260_760--Hb_000428_030 Hb_000996_020 Hb_000996_020 Hb_000260_760--Hb_000996_020 Hb_000260_760--Hb_009178_010 Hb_170077_010 Hb_170077_010 Hb_000260_760--Hb_170077_010 Hb_006794_020--Hb_013358_060 Hb_143629_020 Hb_143629_020 Hb_006794_020--Hb_143629_020 Hb_006794_020--Hb_005885_030 Hb_000331_100 Hb_000331_100 Hb_006794_020--Hb_000331_100 Hb_006794_020--Hb_000270_700 Hb_003725_010 Hb_003725_010 Hb_013358_060--Hb_003725_010 Hb_002078_470 Hb_002078_470 Hb_013358_060--Hb_002078_470 Hb_013358_060--Hb_000331_100 Hb_013358_060--Hb_000428_030 Hb_000035_100 Hb_000035_100 Hb_013358_060--Hb_000035_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.61456 44.8022 35.8272 17.8783 19.5418 10.0597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.93664 10.2238 5.6936 23.8848 30.5314

CAGE analysis