Hb_001608_020

Information

Type -
Description -
Location Contig1608: 29824-43661
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9LK03
description Proline-rich receptor-like protein kinase PERK2 OS=Arabidopsis thaliana GN=PERK2 PE=2 SV=3
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14398: 40499-41346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001608_020 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_010398_010 0.1259636989 - - PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 15a-like [Malus domestica]
3 Hb_000362_090 0.1521165273 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
4 Hb_004800_240 0.1722410027 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
5 Hb_048848_010 0.1746539634 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
6 Hb_004126_080 0.1822622145 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
7 Hb_009193_110 0.1859663183 - - PREDICTED: wall-associated receptor kinase-like 1 isoform X1 [Jatropha curcas]
8 Hb_148682_010 0.1897998796 - - PREDICTED: uncharacterized protein LOC105630720 [Jatropha curcas]
9 Hb_000977_010 0.1908891149 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
10 Hb_000107_560 0.1917411237 - - glutamate receptor 3 plant, putative [Ricinus communis]
11 Hb_001477_040 0.1919496094 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
12 Hb_162280_010 0.1968225094 - - Phosphoprotein phosphatase isoform 2, partial [Theobroma cacao]
13 Hb_001675_100 0.1971064053 - - conserved hypothetical protein [Ricinus communis]
14 Hb_089100_040 0.2004914912 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]
15 Hb_000133_090 0.2017383684 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
16 Hb_001079_070 0.203163976 - - PREDICTED: elongation of fatty acids protein 3-like [Jatropha curcas]
17 Hb_001409_050 0.2053892438 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_008226_100 0.2065517424 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
19 Hb_000313_370 0.2068869389 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_001079_030 0.2070681148 - - PREDICTED: splicing factor U2af small subunit B-like [Jatropha curcas]

Gene co-expression network

sample Hb_001608_020 Hb_001608_020 Hb_010398_010 Hb_010398_010 Hb_001608_020--Hb_010398_010 Hb_000362_090 Hb_000362_090 Hb_001608_020--Hb_000362_090 Hb_004800_240 Hb_004800_240 Hb_001608_020--Hb_004800_240 Hb_048848_010 Hb_048848_010 Hb_001608_020--Hb_048848_010 Hb_004126_080 Hb_004126_080 Hb_001608_020--Hb_004126_080 Hb_009193_110 Hb_009193_110 Hb_001608_020--Hb_009193_110 Hb_010398_010--Hb_000362_090 Hb_001351_040 Hb_001351_040 Hb_010398_010--Hb_001351_040 Hb_010398_010--Hb_048848_010 Hb_000120_970 Hb_000120_970 Hb_010398_010--Hb_000120_970 Hb_000107_560 Hb_000107_560 Hb_010398_010--Hb_000107_560 Hb_000362_090--Hb_009193_110 Hb_000362_090--Hb_004800_240 Hb_001699_150 Hb_001699_150 Hb_000362_090--Hb_001699_150 Hb_089100_040 Hb_089100_040 Hb_000362_090--Hb_089100_040 Hb_004162_120 Hb_004162_120 Hb_000362_090--Hb_004162_120 Hb_148682_010 Hb_148682_010 Hb_000362_090--Hb_148682_010 Hb_004800_240--Hb_009193_110 Hb_004800_240--Hb_148682_010 Hb_012038_010 Hb_012038_010 Hb_004800_240--Hb_012038_010 Hb_001646_010 Hb_001646_010 Hb_004800_240--Hb_001646_010 Hb_000334_130 Hb_000334_130 Hb_004800_240--Hb_000334_130 Hb_004800_240--Hb_004126_080 Hb_003525_020 Hb_003525_020 Hb_048848_010--Hb_003525_020 Hb_048848_010--Hb_000362_090 Hb_001091_030 Hb_001091_030 Hb_048848_010--Hb_001091_030 Hb_000538_190 Hb_000538_190 Hb_048848_010--Hb_000538_190 Hb_048848_010--Hb_001351_040 Hb_004126_080--Hb_148682_010 Hb_004126_080--Hb_001699_150 Hb_004126_080--Hb_001646_010 Hb_001195_020 Hb_001195_020 Hb_004126_080--Hb_001195_020 Hb_159295_010 Hb_159295_010 Hb_004126_080--Hb_159295_010 Hb_009193_110--Hb_012038_010 Hb_000917_100 Hb_000917_100 Hb_009193_110--Hb_000917_100 Hb_002942_110 Hb_002942_110 Hb_009193_110--Hb_002942_110 Hb_008406_040 Hb_008406_040 Hb_009193_110--Hb_008406_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.431162 3.59326 0.989649 2.08337 2.48732 0.703808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.05641 0.0147959 0.197203 3.10947 0.973652

CAGE analysis