Hb_010398_010

Information

Type -
Description -
Location Contig10398: 12665-16730
Sequence    

Annotation

kegg
ID mdm:103447200
description mediator of RNA polymerase II transcription subunit 15a-like
nr
ID XP_008384602.1
description PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 15a-like [Malus domestica]
swissprot
ID F4I171
description Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana GN=MED15A PE=1 SV=1
trembl
ID A0A068VFU1
description Coffea canephora DH200=94 genomic scaffold, scaffold_480 OS=Coffea canephora GN=GSCOC_T00003148001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010398_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 15a-like [Malus domestica]
2 Hb_001608_020 0.1259636989 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000362_090 0.145241649 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
4 Hb_001351_040 0.149495026 - - PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Jatropha curcas]
5 Hb_048848_010 0.1500749961 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
6 Hb_000120_970 0.1594614531 - - PREDICTED: probable acyl-activating enzyme 2 isoform X2 [Jatropha curcas]
7 Hb_000107_560 0.1718753064 - - glutamate receptor 3 plant, putative [Ricinus communis]
8 Hb_089100_040 0.1740267559 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]
9 Hb_009193_110 0.1741455855 - - PREDICTED: wall-associated receptor kinase-like 1 isoform X1 [Jatropha curcas]
10 Hb_020178_060 0.1755347747 - - PREDICTED: nucleobase-ascorbate transporter 3 [Jatropha curcas]
11 Hb_000977_010 0.1904826353 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
12 Hb_011716_110 0.1935604148 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
13 Hb_004800_240 0.1941975303 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
14 Hb_005307_040 0.1987017595 - - gulonolactone oxidase, putative [Ricinus communis]
15 Hb_001544_080 0.2007402047 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
16 Hb_001091_030 0.2009444694 - - hypothetical protein AALP_AA1G173500 [Arabis alpina]
17 Hb_000189_120 0.2013814663 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
18 Hb_004126_080 0.202498291 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
19 Hb_080451_010 0.2041274838 - - PREDICTED: ankyrin repeat-containing protein At2g01680 [Jatropha curcas]
20 Hb_000732_080 0.2045571954 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g45440 [Jatropha curcas]

Gene co-expression network

sample Hb_010398_010 Hb_010398_010 Hb_001608_020 Hb_001608_020 Hb_010398_010--Hb_001608_020 Hb_000362_090 Hb_000362_090 Hb_010398_010--Hb_000362_090 Hb_001351_040 Hb_001351_040 Hb_010398_010--Hb_001351_040 Hb_048848_010 Hb_048848_010 Hb_010398_010--Hb_048848_010 Hb_000120_970 Hb_000120_970 Hb_010398_010--Hb_000120_970 Hb_000107_560 Hb_000107_560 Hb_010398_010--Hb_000107_560 Hb_001608_020--Hb_000362_090 Hb_004800_240 Hb_004800_240 Hb_001608_020--Hb_004800_240 Hb_001608_020--Hb_048848_010 Hb_004126_080 Hb_004126_080 Hb_001608_020--Hb_004126_080 Hb_009193_110 Hb_009193_110 Hb_001608_020--Hb_009193_110 Hb_000362_090--Hb_009193_110 Hb_000362_090--Hb_004800_240 Hb_001699_150 Hb_001699_150 Hb_000362_090--Hb_001699_150 Hb_089100_040 Hb_089100_040 Hb_000362_090--Hb_089100_040 Hb_004162_120 Hb_004162_120 Hb_000362_090--Hb_004162_120 Hb_148682_010 Hb_148682_010 Hb_000362_090--Hb_148682_010 Hb_000977_010 Hb_000977_010 Hb_001351_040--Hb_000977_010 Hb_000315_030 Hb_000315_030 Hb_001351_040--Hb_000315_030 Hb_001351_040--Hb_048848_010 Hb_003384_070 Hb_003384_070 Hb_001351_040--Hb_003384_070 Hb_003640_030 Hb_003640_030 Hb_001351_040--Hb_003640_030 Hb_003525_020 Hb_003525_020 Hb_048848_010--Hb_003525_020 Hb_048848_010--Hb_000362_090 Hb_001091_030 Hb_001091_030 Hb_048848_010--Hb_001091_030 Hb_000538_190 Hb_000538_190 Hb_048848_010--Hb_000538_190 Hb_000120_970--Hb_000107_560 Hb_080451_010 Hb_080451_010 Hb_000120_970--Hb_080451_010 Hb_000521_170 Hb_000521_170 Hb_000120_970--Hb_000521_170 Hb_011828_030 Hb_011828_030 Hb_000120_970--Hb_011828_030 Hb_020178_060 Hb_020178_060 Hb_000120_970--Hb_020178_060 Hb_000120_970--Hb_089100_040 Hb_000107_560--Hb_080451_010 Hb_000107_560--Hb_089100_040 Hb_000107_560--Hb_004162_120 Hb_065500_030 Hb_065500_030 Hb_000107_560--Hb_065500_030 Hb_009897_010 Hb_009897_010 Hb_000107_560--Hb_009897_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.915453 3.69383 0.454411 1.72007 1.97284 0.626844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0465591 0.109862 0.0676967 2.54373 0.752698

CAGE analysis