Hb_009193_110

Information

Type -
Description -
Location Contig9193: 85746-86976
Sequence    

Annotation

kegg
ID pop:POPTR_0010s16600g
description POPTRDRAFT_659213; hypothetical protein
nr
ID XP_012067776.1
description PREDICTED: wall-associated receptor kinase-like 1 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L272
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15710 PE=4 SV=1
Gene Ontology
ID GO:0016301
description wall-associated receptor kinase-like 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62339: 84520-84918 , PASA_asmbl_62341: 85913-86454 , PASA_asmbl_62342: 86465-88280
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009193_110 0.0 - - PREDICTED: wall-associated receptor kinase-like 1 isoform X1 [Jatropha curcas]
2 Hb_004800_240 0.0886748117 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
3 Hb_000362_090 0.0897911453 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
4 Hb_012038_010 0.110793803 - - phospholipid-transporting atpase, putative [Ricinus communis]
5 Hb_000917_100 0.1247967761 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
6 Hb_002942_110 0.1267362461 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
7 Hb_008406_040 0.1312626269 - - -
8 Hb_002553_010 0.1339133621 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 2-like [Populus euphratica]
9 Hb_000751_140 0.134309977 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
10 Hb_004324_060 0.1347200926 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
11 Hb_009674_080 0.1352170447 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
12 Hb_004162_120 0.1358096286 - - PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Populus euphratica]
13 Hb_000334_130 0.1360467159 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
14 Hb_000120_520 0.137159272 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
15 Hb_000866_080 0.1412339239 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
16 Hb_014720_020 0.141364075 - - PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
17 Hb_007031_040 0.1413912307 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
18 Hb_002005_120 0.141870437 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
19 Hb_003120_070 0.1420297333 - - ATP binding protein, putative [Ricinus communis]
20 Hb_004195_120 0.1423480031 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]

Gene co-expression network

sample Hb_009193_110 Hb_009193_110 Hb_004800_240 Hb_004800_240 Hb_009193_110--Hb_004800_240 Hb_000362_090 Hb_000362_090 Hb_009193_110--Hb_000362_090 Hb_012038_010 Hb_012038_010 Hb_009193_110--Hb_012038_010 Hb_000917_100 Hb_000917_100 Hb_009193_110--Hb_000917_100 Hb_002942_110 Hb_002942_110 Hb_009193_110--Hb_002942_110 Hb_008406_040 Hb_008406_040 Hb_009193_110--Hb_008406_040 Hb_148682_010 Hb_148682_010 Hb_004800_240--Hb_148682_010 Hb_004800_240--Hb_012038_010 Hb_001646_010 Hb_001646_010 Hb_004800_240--Hb_001646_010 Hb_000334_130 Hb_000334_130 Hb_004800_240--Hb_000334_130 Hb_004126_080 Hb_004126_080 Hb_004800_240--Hb_004126_080 Hb_000362_090--Hb_004800_240 Hb_001699_150 Hb_001699_150 Hb_000362_090--Hb_001699_150 Hb_089100_040 Hb_089100_040 Hb_000362_090--Hb_089100_040 Hb_004162_120 Hb_004162_120 Hb_000362_090--Hb_004162_120 Hb_000362_090--Hb_148682_010 Hb_044653_020 Hb_044653_020 Hb_012038_010--Hb_044653_020 Hb_009674_080 Hb_009674_080 Hb_012038_010--Hb_009674_080 Hb_004324_060 Hb_004324_060 Hb_012038_010--Hb_004324_060 Hb_003895_020 Hb_003895_020 Hb_012038_010--Hb_003895_020 Hb_012038_010--Hb_002942_110 Hb_000526_060 Hb_000526_060 Hb_012038_010--Hb_000526_060 Hb_002005_120 Hb_002005_120 Hb_000917_100--Hb_002005_120 Hb_000866_080 Hb_000866_080 Hb_000917_100--Hb_000866_080 Hb_002016_060 Hb_002016_060 Hb_000917_100--Hb_002016_060 Hb_015183_100 Hb_015183_100 Hb_000917_100--Hb_015183_100 Hb_002092_070 Hb_002092_070 Hb_000917_100--Hb_002092_070 Hb_001221_090 Hb_001221_090 Hb_000917_100--Hb_001221_090 Hb_004195_120 Hb_004195_120 Hb_002942_110--Hb_004195_120 Hb_020178_050 Hb_020178_050 Hb_002942_110--Hb_020178_050 Hb_128695_030 Hb_128695_030 Hb_002942_110--Hb_128695_030 Hb_001369_770 Hb_001369_770 Hb_002942_110--Hb_001369_770 Hb_002942_110--Hb_004324_060 Hb_002942_110--Hb_003895_020 Hb_013749_020 Hb_013749_020 Hb_008406_040--Hb_013749_020 Hb_000116_510 Hb_000116_510 Hb_008406_040--Hb_000116_510 Hb_000120_420 Hb_000120_420 Hb_008406_040--Hb_000120_420 Hb_167381_020 Hb_167381_020 Hb_008406_040--Hb_167381_020 Hb_000227_310 Hb_000227_310 Hb_008406_040--Hb_000227_310 Hb_118840_050 Hb_118840_050 Hb_008406_040--Hb_118840_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.573 43.6195 16.69 21.2435 22.8263 9.16019
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.20489 2.38275 1.77755 17.9396 10.4689

CAGE analysis