Hb_001491_060

Information

Type -
Description -
Location Contig1491: 79012-80556
Sequence    

Annotation

kegg
ID pop:POPTR_0016s06390g
description POPTRDRAFT_777273; hypothetical protein
nr
ID XP_011042512.1
description PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like isoform X1 [Populus euphratica]
swissprot
ID O80437
description Glycerol-3-phosphate 2-O-acyltransferase 6 OS=Arabidopsis thaliana GN=GPAT6 PE=1 SV=1
trembl
ID B9IIF1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s06390g PE=4 SV=2
Gene Ontology
ID GO:0016746
description glycerol-3-phosphate 2-o-acyltransferase 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001491_060 0.0 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like isoform X1 [Populus euphratica]
2 Hb_001999_190 0.2061081434 - - GDP-mannose transporter, putative [Ricinus communis]
3 Hb_137914_010 0.2415954599 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
4 Hb_002542_120 0.2547032064 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
5 Hb_002588_020 0.2757445194 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
6 Hb_003581_160 0.2792821887 - - -
7 Hb_001148_020 0.2857938253 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
8 Hb_000017_150 0.2914226995 - - hypothetical protein POPTR_0001s09780g [Populus trichocarpa]
9 Hb_005608_010 0.2964035087 - - PREDICTED: U-box domain-containing protein 40 [Jatropha curcas]
10 Hb_184705_010 0.3063546985 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
11 Hb_008983_060 0.317867851 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance protein, putative [Theobroma cacao]
12 Hb_015388_030 0.328995582 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_005504_020 0.3452863149 - - -
14 Hb_179679_010 0.3455506494 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Fragaria vesca subsp. vesca]
15 Hb_005654_020 0.3530370533 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_004330_030 0.3543510395 - - -
17 Hb_000046_230 0.3545937488 - - PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
18 Hb_045370_010 0.3575085561 - - conserved hypothetical protein [Ricinus communis]
19 Hb_121304_020 0.3603016479 - - -
20 Hb_000905_150 0.3609291205 - - Cytochrome P450 [Theobroma cacao]

Gene co-expression network

sample Hb_001491_060 Hb_001491_060 Hb_001999_190 Hb_001999_190 Hb_001491_060--Hb_001999_190 Hb_137914_010 Hb_137914_010 Hb_001491_060--Hb_137914_010 Hb_002542_120 Hb_002542_120 Hb_001491_060--Hb_002542_120 Hb_002588_020 Hb_002588_020 Hb_001491_060--Hb_002588_020 Hb_003581_160 Hb_003581_160 Hb_001491_060--Hb_003581_160 Hb_001148_020 Hb_001148_020 Hb_001491_060--Hb_001148_020 Hb_008983_060 Hb_008983_060 Hb_001999_190--Hb_008983_060 Hb_184705_010 Hb_184705_010 Hb_001999_190--Hb_184705_010 Hb_000107_320 Hb_000107_320 Hb_001999_190--Hb_000107_320 Hb_001999_190--Hb_001148_020 Hb_005975_020 Hb_005975_020 Hb_001999_190--Hb_005975_020 Hb_000017_150 Hb_000017_150 Hb_137914_010--Hb_000017_150 Hb_137914_010--Hb_002588_020 Hb_010398_010 Hb_010398_010 Hb_137914_010--Hb_010398_010 Hb_001477_040 Hb_001477_040 Hb_137914_010--Hb_001477_040 Hb_001608_020 Hb_001608_020 Hb_137914_010--Hb_001608_020 Hb_009189_040 Hb_009189_040 Hb_002542_120--Hb_009189_040 Hb_005608_010 Hb_005608_010 Hb_002542_120--Hb_005608_010 Hb_003222_010 Hb_003222_010 Hb_002542_120--Hb_003222_010 Hb_007926_010 Hb_007926_010 Hb_002542_120--Hb_007926_010 Hb_004330_030 Hb_004330_030 Hb_002542_120--Hb_004330_030 Hb_002588_020--Hb_003581_160 Hb_000046_230 Hb_000046_230 Hb_002588_020--Hb_000046_230 Hb_011344_100 Hb_011344_100 Hb_002588_020--Hb_011344_100 Hb_001269_280 Hb_001269_280 Hb_002588_020--Hb_001269_280 Hb_005654_020 Hb_005654_020 Hb_003581_160--Hb_005654_020 Hb_011468_010 Hb_011468_010 Hb_003581_160--Hb_011468_010 Hb_003581_160--Hb_000046_230 Hb_003581_160--Hb_137914_010 Hb_121304_020 Hb_121304_020 Hb_001148_020--Hb_121304_020 Hb_001148_020--Hb_184705_010 Hb_001148_020--Hb_000017_150 Hb_060237_020 Hb_060237_020 Hb_001148_020--Hb_060237_020 Hb_008864_040 Hb_008864_040 Hb_001148_020--Hb_008864_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0160535 0.0320271 0 0.026096 0.0461665 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0115246 0

CAGE analysis