Hb_009189_040

Information

Type -
Description -
Location Contig9189: 20594-21211
Sequence    

Annotation

kegg
ID fve:101309247
description uncharacterized protein LOC101309247
nr
ID XP_010059042.1
description PREDICTED: uncharacterized protein LOC104446949 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID J7G2Z7
description Non-ltr retroelement reverse transcriptase OS=Rosa rugosa PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009189_040 0.0 - - PREDICTED: uncharacterized protein LOC104446949 [Eucalyptus grandis]
2 Hb_007926_010 0.2243424167 - - PREDICTED: UPF0554 protein C2orf43 homolog isoform X4 [Citrus sinensis]
3 Hb_002542_120 0.2351453692 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
4 Hb_015928_020 0.2402830758 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
5 Hb_179679_010 0.2587472631 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Fragaria vesca subsp. vesca]
6 Hb_003222_010 0.2603242533 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
7 Hb_002196_010 0.2725325347 - - PREDICTED: LOW QUALITY PROTEIN: proline-rich receptor-like protein kinase PERK1 [Jatropha curcas]
8 Hb_061466_020 0.2751721033 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
9 Hb_000936_040 0.2794809495 - - hypothetical protein JCGZ_00046 [Jatropha curcas]
10 Hb_001214_170 0.2868989587 - - pyruvate kinase family protein [Medicago truncatula]
11 Hb_161023_010 0.2905488296 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]
12 Hb_006420_020 0.2910687502 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
13 Hb_003060_050 0.2943412562 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
14 Hb_001622_010 0.296075547 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_005464_030 0.2966995768 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_005517_010 0.2981713909 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
17 Hb_001916_060 0.2991732342 - - PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2 [Jatropha curcas]
18 Hb_003914_030 0.299324478 - - -
19 Hb_004330_030 0.3035984939 - - -
20 Hb_080147_080 0.3040361645 - - peroxiredoxin, putative [Ricinus communis]

Gene co-expression network

sample Hb_009189_040 Hb_009189_040 Hb_007926_010 Hb_007926_010 Hb_009189_040--Hb_007926_010 Hb_002542_120 Hb_002542_120 Hb_009189_040--Hb_002542_120 Hb_015928_020 Hb_015928_020 Hb_009189_040--Hb_015928_020 Hb_179679_010 Hb_179679_010 Hb_009189_040--Hb_179679_010 Hb_003222_010 Hb_003222_010 Hb_009189_040--Hb_003222_010 Hb_002196_010 Hb_002196_010 Hb_009189_040--Hb_002196_010 Hb_001214_170 Hb_001214_170 Hb_007926_010--Hb_001214_170 Hb_007805_020 Hb_007805_020 Hb_007926_010--Hb_007805_020 Hb_001916_060 Hb_001916_060 Hb_007926_010--Hb_001916_060 Hb_007926_010--Hb_003222_010 Hb_054436_010 Hb_054436_010 Hb_007926_010--Hb_054436_010 Hb_001491_060 Hb_001491_060 Hb_002542_120--Hb_001491_060 Hb_005608_010 Hb_005608_010 Hb_002542_120--Hb_005608_010 Hb_002542_120--Hb_003222_010 Hb_002542_120--Hb_007926_010 Hb_004330_030 Hb_004330_030 Hb_002542_120--Hb_004330_030 Hb_014361_050 Hb_014361_050 Hb_015928_020--Hb_014361_050 Hb_061466_020 Hb_061466_020 Hb_015928_020--Hb_061466_020 Hb_000997_010 Hb_000997_010 Hb_015928_020--Hb_000997_010 Hb_008203_020 Hb_008203_020 Hb_015928_020--Hb_008203_020 Hb_074184_010 Hb_074184_010 Hb_015928_020--Hb_074184_010 Hb_006286_010 Hb_006286_010 Hb_015928_020--Hb_006286_010 Hb_006269_040 Hb_006269_040 Hb_179679_010--Hb_006269_040 Hb_049958_010 Hb_049958_010 Hb_179679_010--Hb_049958_010 Hb_000181_440 Hb_000181_440 Hb_179679_010--Hb_000181_440 Hb_079733_010 Hb_079733_010 Hb_179679_010--Hb_079733_010 Hb_003096_040 Hb_003096_040 Hb_179679_010--Hb_003096_040 Hb_003107_020 Hb_003107_020 Hb_179679_010--Hb_003107_020 Hb_009189_030 Hb_009189_030 Hb_003222_010--Hb_009189_030 Hb_001276_010 Hb_001276_010 Hb_003222_010--Hb_001276_010 Hb_001935_190 Hb_001935_190 Hb_003222_010--Hb_001935_190 Hb_004631_160 Hb_004631_160 Hb_003222_010--Hb_004631_160 Hb_120662_010 Hb_120662_010 Hb_003222_010--Hb_120662_010 Hb_003222_010--Hb_001916_060 Hb_001622_010 Hb_001622_010 Hb_002196_010--Hb_001622_010 Hb_005464_030 Hb_005464_030 Hb_002196_010--Hb_005464_030 Hb_006420_020 Hb_006420_020 Hb_002196_010--Hb_006420_020 Hb_080147_080 Hb_080147_080 Hb_002196_010--Hb_080147_080 Hb_001865_040 Hb_001865_040 Hb_002196_010--Hb_001865_040 Hb_009393_200 Hb_009393_200 Hb_002196_010--Hb_009393_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.250078 0.254352 0.0336888 0.133471 0.159368 0.0602743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis