Hb_179679_010

Information

Type -
Description -
Location Contig179679: 80-574
Sequence    

Annotation

kegg
ID fve:101314641
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1-like
nr
ID XP_011460350.1
description PREDICTED: putative receptor-like protein kinase At4g00960 [Fragaria vesca subsp. vesca]
swissprot
ID Q8W4G6
description Cysteine-rich receptor-like protein kinase 15 OS=Arabidopsis thaliana GN=CRK15 PE=2 SV=2
trembl
ID U5FY72
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s03710g PE=4 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase rks1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_179679_010 0.0 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Fragaria vesca subsp. vesca]
2 Hb_006269_040 0.192675977 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
3 Hb_049958_010 0.2000846969 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_000181_440 0.2039290982 - - -
5 Hb_079733_010 0.2111101087 - - -
6 Hb_003096_040 0.2167212269 transcription factor TF Family: HB hypothetical protein POPTR_0005s07290g [Populus trichocarpa]
7 Hb_003107_020 0.2204638339 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
8 Hb_021576_140 0.2245097302 - - PREDICTED: protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION-like [Jatropha curcas]
9 Hb_003060_050 0.2259286734 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
10 Hb_010261_010 0.2310508828 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
11 Hb_000928_150 0.2311207028 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000834_240 0.2334220542 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
13 Hb_005464_030 0.2343857168 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_059641_010 0.2406963942 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
15 Hb_000152_640 0.2410490996 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
16 Hb_000936_040 0.2411555873 - - hypothetical protein JCGZ_00046 [Jatropha curcas]
17 Hb_002027_380 0.2426462847 - - PREDICTED: secoisolariciresinol dehydrogenase isoform X2 [Jatropha curcas]
18 Hb_002316_050 0.2434528289 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002326_070 0.2461339074 - - ent-kaurene oxidase, chloroplastic [Jatropha curcas]
20 Hb_006745_010 0.247351474 - - PREDICTED: uncharacterized protein LOC105640095 [Jatropha curcas]

Gene co-expression network

sample Hb_179679_010 Hb_179679_010 Hb_006269_040 Hb_006269_040 Hb_179679_010--Hb_006269_040 Hb_049958_010 Hb_049958_010 Hb_179679_010--Hb_049958_010 Hb_000181_440 Hb_000181_440 Hb_179679_010--Hb_000181_440 Hb_079733_010 Hb_079733_010 Hb_179679_010--Hb_079733_010 Hb_003096_040 Hb_003096_040 Hb_179679_010--Hb_003096_040 Hb_003107_020 Hb_003107_020 Hb_179679_010--Hb_003107_020 Hb_144550_020 Hb_144550_020 Hb_006269_040--Hb_144550_020 Hb_012395_080 Hb_012395_080 Hb_006269_040--Hb_012395_080 Hb_002370_040 Hb_002370_040 Hb_006269_040--Hb_002370_040 Hb_000136_190 Hb_000136_190 Hb_006269_040--Hb_000136_190 Hb_001916_060 Hb_001916_060 Hb_006269_040--Hb_001916_060 Hb_059641_010 Hb_059641_010 Hb_049958_010--Hb_059641_010 Hb_000571_150 Hb_000571_150 Hb_049958_010--Hb_000571_150 Hb_126506_010 Hb_126506_010 Hb_049958_010--Hb_126506_010 Hb_169329_010 Hb_169329_010 Hb_049958_010--Hb_169329_010 Hb_000123_030 Hb_000123_030 Hb_049958_010--Hb_000123_030 Hb_028795_010 Hb_028795_010 Hb_000181_440--Hb_028795_010 Hb_000181_440--Hb_003096_040 Hb_010261_010 Hb_010261_010 Hb_000181_440--Hb_010261_010 Hb_033926_010 Hb_033926_010 Hb_000181_440--Hb_033926_010 Hb_003633_140 Hb_003633_140 Hb_000181_440--Hb_003633_140 Hb_075449_020 Hb_075449_020 Hb_079733_010--Hb_075449_020 Hb_002027_380 Hb_002027_380 Hb_079733_010--Hb_002027_380 Hb_002326_070 Hb_002326_070 Hb_079733_010--Hb_002326_070 Hb_001493_010 Hb_001493_010 Hb_079733_010--Hb_001493_010 Hb_002316_050 Hb_002316_050 Hb_079733_010--Hb_002316_050 Hb_000390_220 Hb_000390_220 Hb_079733_010--Hb_000390_220 Hb_031527_070 Hb_031527_070 Hb_003096_040--Hb_031527_070 Hb_003096_040--Hb_010261_010 Hb_153161_010 Hb_153161_010 Hb_003096_040--Hb_153161_010 Hb_000175_350 Hb_000175_350 Hb_003096_040--Hb_000175_350 Hb_178127_010 Hb_178127_010 Hb_003096_040--Hb_178127_010 Hb_005510_010 Hb_005510_010 Hb_003096_040--Hb_005510_010 Hb_007785_010 Hb_007785_010 Hb_003107_020--Hb_007785_010 Hb_011716_110 Hb_011716_110 Hb_003107_020--Hb_011716_110 Hb_001055_030 Hb_001055_030 Hb_003107_020--Hb_001055_030 Hb_008864_040 Hb_008864_040 Hb_003107_020--Hb_008864_040 Hb_002739_150 Hb_002739_150 Hb_003107_020--Hb_002739_150 Hb_000120_970 Hb_000120_970 Hb_003107_020--Hb_000120_970
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.02819 2.60376 0.414946 1.42526 1.45108 0.945062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.180733 0 0.472289 0

CAGE analysis