Hb_008864_040

Information

Type -
Description -
Location Contig8864: 19560-20471
Sequence    

Annotation

kegg
ID rcu:RCOM_0938630
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012064828.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
swissprot
ID Q9XIM8
description Pentatricopeptide repeat-containing protein At2g15980 OS=Arabidopsis thaliana GN=At2g15980 PE=2 SV=1
trembl
ID A0A067LII9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05526 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61503: 19912-20167
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008864_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
2 Hb_030827_060 0.1364434009 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-2b [Jatropha curcas]
3 Hb_060237_020 0.1431247491 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000086_580 0.1468683716 - - ring finger protein, putative [Ricinus communis]
5 Hb_009028_030 0.1511760071 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
6 Hb_104265_030 0.1595806651 - - hypothetical protein POPTR_0001s31230g [Populus trichocarpa]
7 Hb_075449_020 0.1628268167 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
8 Hb_003349_010 0.1634868404 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10023911mg [Citrus clementina]
9 Hb_001189_130 0.167633033 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]
10 Hb_002173_020 0.1702166341 - - PREDICTED: uncharacterized protein LOC105801078 [Gossypium raimondii]
11 Hb_015475_020 0.1724179959 - - importin beta-1, putative [Ricinus communis]
12 Hb_003107_020 0.1728737814 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
13 Hb_003710_040 0.1734750032 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
14 Hb_002999_060 0.174746543 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
15 Hb_031527_070 0.1749997369 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
16 Hb_005333_030 0.1751673592 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
17 Hb_018133_030 0.1779834876 - - Heme-binding protein, putative [Ricinus communis]
18 Hb_000175_350 0.1780241463 - - phopholipase d alpha, putative [Ricinus communis]
19 Hb_004449_050 0.1783509342 - - PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Jatropha curcas]
20 Hb_001638_040 0.1800601979 - - Nucleobase-ascorbate transporter 3 [Glycine soja]

Gene co-expression network

sample Hb_008864_040 Hb_008864_040 Hb_030827_060 Hb_030827_060 Hb_008864_040--Hb_030827_060 Hb_060237_020 Hb_060237_020 Hb_008864_040--Hb_060237_020 Hb_000086_580 Hb_000086_580 Hb_008864_040--Hb_000086_580 Hb_009028_030 Hb_009028_030 Hb_008864_040--Hb_009028_030 Hb_104265_030 Hb_104265_030 Hb_008864_040--Hb_104265_030 Hb_075449_020 Hb_075449_020 Hb_008864_040--Hb_075449_020 Hb_000422_110 Hb_000422_110 Hb_030827_060--Hb_000422_110 Hb_026198_040 Hb_026198_040 Hb_030827_060--Hb_026198_040 Hb_030827_060--Hb_104265_030 Hb_018133_030 Hb_018133_030 Hb_030827_060--Hb_018133_030 Hb_004449_050 Hb_004449_050 Hb_030827_060--Hb_004449_050 Hb_002999_060 Hb_002999_060 Hb_030827_060--Hb_002999_060 Hb_000390_100 Hb_000390_100 Hb_060237_020--Hb_000390_100 Hb_000215_100 Hb_000215_100 Hb_060237_020--Hb_000215_100 Hb_002173_020 Hb_002173_020 Hb_060237_020--Hb_002173_020 Hb_000627_180 Hb_000627_180 Hb_060237_020--Hb_000627_180 Hb_001055_030 Hb_001055_030 Hb_060237_020--Hb_001055_030 Hb_065525_060 Hb_065525_060 Hb_000086_580--Hb_065525_060 Hb_093084_070 Hb_093084_070 Hb_000086_580--Hb_093084_070 Hb_000236_220 Hb_000236_220 Hb_000086_580--Hb_000236_220 Hb_003373_040 Hb_003373_040 Hb_000086_580--Hb_003373_040 Hb_000363_130 Hb_000363_130 Hb_000086_580--Hb_000363_130 Hb_003777_160 Hb_003777_160 Hb_000086_580--Hb_003777_160 Hb_057451_010 Hb_057451_010 Hb_009028_030--Hb_057451_010 Hb_003710_040 Hb_003710_040 Hb_009028_030--Hb_003710_040 Hb_000265_250 Hb_000265_250 Hb_009028_030--Hb_000265_250 Hb_003157_010 Hb_003157_010 Hb_009028_030--Hb_003157_010 Hb_004899_070 Hb_004899_070 Hb_009028_030--Hb_004899_070 Hb_011465_030 Hb_011465_030 Hb_009028_030--Hb_011465_030 Hb_029223_050 Hb_029223_050 Hb_104265_030--Hb_029223_050 Hb_003125_030 Hb_003125_030 Hb_104265_030--Hb_003125_030 Hb_000123_350 Hb_000123_350 Hb_104265_030--Hb_000123_350 Hb_012226_010 Hb_012226_010 Hb_104265_030--Hb_012226_010 Hb_104265_030--Hb_026198_040 Hb_000896_060 Hb_000896_060 Hb_104265_030--Hb_000896_060 Hb_001662_030 Hb_001662_030 Hb_075449_020--Hb_001662_030 Hb_000390_220 Hb_000390_220 Hb_075449_020--Hb_000390_220 Hb_025306_010 Hb_025306_010 Hb_075449_020--Hb_025306_010 Hb_000540_120 Hb_000540_120 Hb_075449_020--Hb_000540_120 Hb_075449_020--Hb_011465_030 Hb_001999_250 Hb_001999_250 Hb_075449_020--Hb_001999_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.20996 4.63955 0.350141 1.91997 3.3623 1.12836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.644913 0.60854 0.552088 1.27115 0.714971

CAGE analysis