Hb_000086_580

Information

Type -
Description -
Location Contig86: 516802-517944
Sequence    

Annotation

kegg
ID rcu:RCOM_0884200
description ring finger protein, putative
nr
ID XP_002522602.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID Q8LFY8
description RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2
trembl
ID B9S9D3
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_0884200 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl54-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_580 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_065525_060 0.0922091404 - - conserved hypothetical protein [Ricinus communis]
3 Hb_093084_070 0.0967587001 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
4 Hb_000236_220 0.0993003097 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
5 Hb_003373_040 0.1015087202 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
6 Hb_000363_130 0.1081850534 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
7 Hb_003777_160 0.109360174 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
8 Hb_155702_010 0.1099164016 - - Tetraspanin-5 [Gossypium arboreum]
9 Hb_000836_270 0.1126543779 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
10 Hb_000152_340 0.114031128 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
11 Hb_000169_130 0.1161829029 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
12 Hb_000046_010 0.1168530199 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
13 Hb_030565_090 0.1169019507 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
14 Hb_000336_140 0.1193959988 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004480_040 0.1194568119 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
16 Hb_000034_160 0.1198686627 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
17 Hb_003126_030 0.1204453309 - - conserved hypothetical protein [Ricinus communis]
18 Hb_156850_070 0.1209699672 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000563_640 0.1210559238 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
20 Hb_000820_120 0.1216491493 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_580 Hb_000086_580 Hb_065525_060 Hb_065525_060 Hb_000086_580--Hb_065525_060 Hb_093084_070 Hb_093084_070 Hb_000086_580--Hb_093084_070 Hb_000236_220 Hb_000236_220 Hb_000086_580--Hb_000236_220 Hb_003373_040 Hb_003373_040 Hb_000086_580--Hb_003373_040 Hb_000363_130 Hb_000363_130 Hb_000086_580--Hb_000363_130 Hb_003777_160 Hb_003777_160 Hb_000086_580--Hb_003777_160 Hb_000169_130 Hb_000169_130 Hb_065525_060--Hb_000169_130 Hb_065525_060--Hb_003373_040 Hb_000152_340 Hb_000152_340 Hb_065525_060--Hb_000152_340 Hb_000556_170 Hb_000556_170 Hb_065525_060--Hb_000556_170 Hb_031527_020 Hb_031527_020 Hb_065525_060--Hb_031527_020 Hb_065525_060--Hb_000236_220 Hb_093084_070--Hb_000236_220 Hb_093084_070--Hb_003373_040 Hb_000236_410 Hb_000236_410 Hb_093084_070--Hb_000236_410 Hb_001055_030 Hb_001055_030 Hb_093084_070--Hb_001055_030 Hb_000061_490 Hb_000061_490 Hb_093084_070--Hb_000061_490 Hb_074969_010 Hb_074969_010 Hb_093084_070--Hb_074969_010 Hb_000236_220--Hb_003373_040 Hb_004480_040 Hb_004480_040 Hb_000236_220--Hb_004480_040 Hb_005260_010 Hb_005260_010 Hb_000236_220--Hb_005260_010 Hb_001141_370 Hb_001141_370 Hb_000236_220--Hb_001141_370 Hb_000441_070 Hb_000441_070 Hb_000236_220--Hb_000441_070 Hb_004109_030 Hb_004109_030 Hb_003373_040--Hb_004109_030 Hb_000070_080 Hb_000070_080 Hb_003373_040--Hb_000070_080 Hb_008103_060 Hb_008103_060 Hb_003373_040--Hb_008103_060 Hb_002078_220 Hb_002078_220 Hb_003373_040--Hb_002078_220 Hb_001946_300 Hb_001946_300 Hb_000363_130--Hb_001946_300 Hb_140049_020 Hb_140049_020 Hb_000363_130--Hb_140049_020 Hb_000313_340 Hb_000313_340 Hb_000363_130--Hb_000313_340 Hb_000865_080 Hb_000865_080 Hb_000363_130--Hb_000865_080 Hb_030565_090 Hb_030565_090 Hb_000363_130--Hb_030565_090 Hb_000136_090 Hb_000136_090 Hb_000363_130--Hb_000136_090 Hb_019153_020 Hb_019153_020 Hb_003777_160--Hb_019153_020 Hb_004635_050 Hb_004635_050 Hb_003777_160--Hb_004635_050 Hb_000032_010 Hb_000032_010 Hb_003777_160--Hb_000032_010 Hb_033883_060 Hb_033883_060 Hb_003777_160--Hb_033883_060 Hb_000529_260 Hb_000529_260 Hb_003777_160--Hb_000529_260 Hb_002221_050 Hb_002221_050 Hb_003777_160--Hb_002221_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.6736 46.1435 9.09559 18.9991 36.0746 23.9468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6465 14.583 17.3902 21.1776 9.49649

CAGE analysis