Hb_002173_020

Information

Type -
Description -
Location Contig2173: 35797-56483
Sequence    

Annotation

kegg
ID rcu:RCOM_1154320
description Nodulation receptor kinase precursor, putative (EC:2.7.10.2)
nr
ID XP_012487867.1
description PREDICTED: uncharacterized protein LOC105801078 [Gossypium raimondii]
swissprot
ID Q9FLW0
description Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1
trembl
ID A0A067K6Y2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12467 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at5g24010

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22436: 35220-35346 , PASA_asmbl_22437: 38788-39103 , PASA_asmbl_22440: 55020-55285 , PASA_asmbl_22441: 56458-58472 , PASA_asmbl_22442: 56304-56689
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002173_020 0.0 - - PREDICTED: uncharacterized protein LOC105801078 [Gossypium raimondii]
2 Hb_000979_240 0.1255900271 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
3 Hb_000599_130 0.1319437724 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
4 Hb_104265_030 0.1368248132 - - hypothetical protein POPTR_0001s31230g [Populus trichocarpa]
5 Hb_065500_030 0.1375720336 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]
6 Hb_003125_030 0.1383783285 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
7 Hb_001511_110 0.1390654834 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
8 Hb_000120_420 0.1405454742 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
9 Hb_000175_350 0.1430889276 - - phopholipase d alpha, putative [Ricinus communis]
10 Hb_002005_120 0.1442947522 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
11 Hb_001006_100 0.1446312955 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
12 Hb_004310_040 0.1456188162 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000197_290 0.1476094565 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
14 Hb_000046_070 0.1526424588 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
15 Hb_005333_030 0.1528134789 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
16 Hb_003106_030 0.1543303147 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
17 Hb_000768_180 0.1546583387 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
18 Hb_007813_030 0.156175541 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At4g19050 [Jatropha curcas]
19 Hb_000123_350 0.1565191728 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
20 Hb_001989_050 0.1579049621 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 5 [Jatropha curcas]

Gene co-expression network

sample Hb_002173_020 Hb_002173_020 Hb_000979_240 Hb_000979_240 Hb_002173_020--Hb_000979_240 Hb_000599_130 Hb_000599_130 Hb_002173_020--Hb_000599_130 Hb_104265_030 Hb_104265_030 Hb_002173_020--Hb_104265_030 Hb_065500_030 Hb_065500_030 Hb_002173_020--Hb_065500_030 Hb_003125_030 Hb_003125_030 Hb_002173_020--Hb_003125_030 Hb_001511_110 Hb_001511_110 Hb_002173_020--Hb_001511_110 Hb_000175_350 Hb_000175_350 Hb_000979_240--Hb_000175_350 Hb_001488_270 Hb_001488_270 Hb_000979_240--Hb_001488_270 Hb_000197_290 Hb_000197_290 Hb_000979_240--Hb_000197_290 Hb_000751_140 Hb_000751_140 Hb_000979_240--Hb_000751_140 Hb_000979_240--Hb_000599_130 Hb_000574_510 Hb_000574_510 Hb_000979_240--Hb_000574_510 Hb_000599_130--Hb_000175_350 Hb_001369_770 Hb_001369_770 Hb_000599_130--Hb_001369_770 Hb_018301_010 Hb_018301_010 Hb_000599_130--Hb_018301_010 Hb_002942_110 Hb_002942_110 Hb_000599_130--Hb_002942_110 Hb_004310_040 Hb_004310_040 Hb_000599_130--Hb_004310_040 Hb_000120_420 Hb_000120_420 Hb_000599_130--Hb_000120_420 Hb_029223_050 Hb_029223_050 Hb_104265_030--Hb_029223_050 Hb_104265_030--Hb_003125_030 Hb_000123_350 Hb_000123_350 Hb_104265_030--Hb_000123_350 Hb_012226_010 Hb_012226_010 Hb_104265_030--Hb_012226_010 Hb_026198_040 Hb_026198_040 Hb_104265_030--Hb_026198_040 Hb_000896_060 Hb_000896_060 Hb_104265_030--Hb_000896_060 Hb_002005_120 Hb_002005_120 Hb_065500_030--Hb_002005_120 Hb_011828_030 Hb_011828_030 Hb_065500_030--Hb_011828_030 Hb_004162_120 Hb_004162_120 Hb_065500_030--Hb_004162_120 Hb_000836_020 Hb_000836_020 Hb_065500_030--Hb_000836_020 Hb_000117_070 Hb_000117_070 Hb_065500_030--Hb_000117_070 Hb_065500_030--Hb_000599_130 Hb_003125_030--Hb_012226_010 Hb_003506_070 Hb_003506_070 Hb_003125_030--Hb_003506_070 Hb_000540_120 Hb_000540_120 Hb_003125_030--Hb_000540_120 Hb_001525_010 Hb_001525_010 Hb_003125_030--Hb_001525_010 Hb_000327_280 Hb_000327_280 Hb_003125_030--Hb_000327_280 Hb_001511_110--Hb_029223_050 Hb_000340_110 Hb_000340_110 Hb_001511_110--Hb_000340_110 Hb_001141_370 Hb_001141_370 Hb_001511_110--Hb_001141_370 Hb_000832_320 Hb_000832_320 Hb_001511_110--Hb_000832_320 Hb_000243_380 Hb_000243_380 Hb_001511_110--Hb_000243_380 Hb_004371_010 Hb_004371_010 Hb_001511_110--Hb_004371_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.25962 14.6249 2.35843 5.09544 5.11576 5.6648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.91892 1.60974 0.596805 4.45797 4.28973

CAGE analysis