Hb_006269_040

Information

Type transcription factor
Description TF Family: GNAT
Location Contig6269: 44187-53681
Sequence    

Annotation

kegg
ID rcu:RCOM_1465100
description N-acetyltransferase, putative
nr
ID XP_002514546.1
description N-acetyltransferase, putative [Ricinus communis]
swissprot
ID Q5KQI6
description Probable acetyltransferase NSI OS=Oryza sativa subsp. japonica GN=NSI PE=2 SV=1
trembl
ID B9RLC7
description N-acetyltransferase, putative OS=Ricinus communis GN=RCOM_1465100 PE=4 SV=1
Gene Ontology
ID GO:0008080
description uncharacterized n-acetyltransferase ycf52

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006269_040 0.0 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
2 Hb_144550_020 0.1793688339 - - -
3 Hb_179679_010 0.192675977 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Fragaria vesca subsp. vesca]
4 Hb_012395_080 0.204103597 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
5 Hb_002370_040 0.2075803556 - - PREDICTED: uncharacterized protein LOC105644336 [Jatropha curcas]
6 Hb_000136_190 0.2197473881 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
7 Hb_001916_060 0.2233191606 - - PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2 [Jatropha curcas]
8 Hb_049958_010 0.2282131327 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
9 Hb_000928_150 0.228939764 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003814_030 0.2302243016 - - PREDICTED: WAT1-related protein At5g47470-like isoform X2 [Jatropha curcas]
11 Hb_007481_030 0.2308869417 - - PREDICTED: uncharacterized protein LOC105628433 [Jatropha curcas]
12 Hb_010531_050 0.2364013039 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
13 Hb_003096_040 0.2370631293 transcription factor TF Family: HB hypothetical protein POPTR_0005s07290g [Populus trichocarpa]
14 Hb_000181_440 0.2379686739 - - -
15 Hb_002232_150 0.2392389171 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]
16 Hb_000062_030 0.2393649281 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X2 [Jatropha curcas]
17 Hb_003854_020 0.2398638174 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
18 Hb_114984_010 0.2439401986 - - conserved hypothetical protein [Ricinus communis]
19 Hb_031527_070 0.2463626594 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
20 Hb_005883_040 0.2475996235 - - hypothetical protein JCGZ_11546 [Jatropha curcas]

Gene co-expression network

sample Hb_006269_040 Hb_006269_040 Hb_144550_020 Hb_144550_020 Hb_006269_040--Hb_144550_020 Hb_179679_010 Hb_179679_010 Hb_006269_040--Hb_179679_010 Hb_012395_080 Hb_012395_080 Hb_006269_040--Hb_012395_080 Hb_002370_040 Hb_002370_040 Hb_006269_040--Hb_002370_040 Hb_000136_190 Hb_000136_190 Hb_006269_040--Hb_000136_190 Hb_001916_060 Hb_001916_060 Hb_006269_040--Hb_001916_060 Hb_144550_020--Hb_012395_080 Hb_144550_020--Hb_000136_190 Hb_144550_020--Hb_002370_040 Hb_003854_020 Hb_003854_020 Hb_144550_020--Hb_003854_020 Hb_000330_160 Hb_000330_160 Hb_144550_020--Hb_000330_160 Hb_049958_010 Hb_049958_010 Hb_179679_010--Hb_049958_010 Hb_000181_440 Hb_000181_440 Hb_179679_010--Hb_000181_440 Hb_079733_010 Hb_079733_010 Hb_179679_010--Hb_079733_010 Hb_003096_040 Hb_003096_040 Hb_179679_010--Hb_003096_040 Hb_003107_020 Hb_003107_020 Hb_179679_010--Hb_003107_020 Hb_012395_080--Hb_002370_040 Hb_007481_030 Hb_007481_030 Hb_012395_080--Hb_007481_030 Hb_008616_030 Hb_008616_030 Hb_012395_080--Hb_008616_030 Hb_012395_080--Hb_000136_190 Hb_045870_010 Hb_045870_010 Hb_012395_080--Hb_045870_010 Hb_002370_040--Hb_007481_030 Hb_003895_030 Hb_003895_030 Hb_002370_040--Hb_003895_030 Hb_002370_040--Hb_000136_190 Hb_007223_010 Hb_007223_010 Hb_002370_040--Hb_007223_010 Hb_100525_010 Hb_100525_010 Hb_002370_040--Hb_100525_010 Hb_003814_030 Hb_003814_030 Hb_000136_190--Hb_003814_030 Hb_000136_190--Hb_000330_160 Hb_000062_060 Hb_000062_060 Hb_000136_190--Hb_000062_060 Hb_001508_020 Hb_001508_020 Hb_000136_190--Hb_001508_020 Hb_004657_090 Hb_004657_090 Hb_000136_190--Hb_004657_090 Hb_101020_010 Hb_101020_010 Hb_001916_060--Hb_101020_010 Hb_114984_010 Hb_114984_010 Hb_001916_060--Hb_114984_010 Hb_001195_150 Hb_001195_150 Hb_001916_060--Hb_001195_150 Hb_128376_010 Hb_128376_010 Hb_001916_060--Hb_128376_010 Hb_005517_010 Hb_005517_010 Hb_001916_060--Hb_005517_010 Hb_001935_190 Hb_001935_190 Hb_001916_060--Hb_001935_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0717606 0.096112 0.0431113 0.0717608 0.10549 0.102218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0427939 0

CAGE analysis