Hb_144550_020

Information

Type -
Description -
Location Contig144550: 8346-8652
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_144550_020 0.0 - - -
2 Hb_012395_080 0.1573619249 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
3 Hb_006269_040 0.1793688339 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
4 Hb_000136_190 0.1828120963 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
5 Hb_002370_040 0.1885901259 - - PREDICTED: uncharacterized protein LOC105644336 [Jatropha curcas]
6 Hb_003854_020 0.1926189534 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
7 Hb_000330_160 0.1935194301 - - hypothetical protein JCGZ_04462 [Jatropha curcas]
8 Hb_059641_010 0.1979709485 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
9 Hb_169329_010 0.2035691906 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]
10 Hb_003814_030 0.2112355545 - - PREDICTED: WAT1-related protein At5g47470-like isoform X2 [Jatropha curcas]
11 Hb_100525_010 0.2113573435 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
12 Hb_003060_050 0.2146179649 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
13 Hb_008616_030 0.2150538 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
14 Hb_003492_010 0.2161731889 - - DREPP plasma membrane polypeptide family protein [Populus trichocarpa]
15 Hb_000258_360 0.2171198627 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
16 Hb_049958_010 0.2187793029 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
17 Hb_000869_060 0.2318716546 - - hypothetical protein L484_003245 [Morus notabilis]
18 Hb_009848_020 0.2334209924 - - hypothetical protein VITISV_026702 [Vitis vinifera]
19 Hb_009119_030 0.235082448 - - GMFP4 [Medicago truncatula]
20 Hb_003222_010 0.236331638 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]

Gene co-expression network

sample Hb_144550_020 Hb_144550_020 Hb_012395_080 Hb_012395_080 Hb_144550_020--Hb_012395_080 Hb_006269_040 Hb_006269_040 Hb_144550_020--Hb_006269_040 Hb_000136_190 Hb_000136_190 Hb_144550_020--Hb_000136_190 Hb_002370_040 Hb_002370_040 Hb_144550_020--Hb_002370_040 Hb_003854_020 Hb_003854_020 Hb_144550_020--Hb_003854_020 Hb_000330_160 Hb_000330_160 Hb_144550_020--Hb_000330_160 Hb_012395_080--Hb_002370_040 Hb_007481_030 Hb_007481_030 Hb_012395_080--Hb_007481_030 Hb_008616_030 Hb_008616_030 Hb_012395_080--Hb_008616_030 Hb_012395_080--Hb_000136_190 Hb_045870_010 Hb_045870_010 Hb_012395_080--Hb_045870_010 Hb_179679_010 Hb_179679_010 Hb_006269_040--Hb_179679_010 Hb_006269_040--Hb_012395_080 Hb_006269_040--Hb_002370_040 Hb_006269_040--Hb_000136_190 Hb_001916_060 Hb_001916_060 Hb_006269_040--Hb_001916_060 Hb_003814_030 Hb_003814_030 Hb_000136_190--Hb_003814_030 Hb_000136_190--Hb_002370_040 Hb_000136_190--Hb_000330_160 Hb_000062_060 Hb_000062_060 Hb_000136_190--Hb_000062_060 Hb_001508_020 Hb_001508_020 Hb_000136_190--Hb_001508_020 Hb_004657_090 Hb_004657_090 Hb_000136_190--Hb_004657_090 Hb_002370_040--Hb_007481_030 Hb_003895_030 Hb_003895_030 Hb_002370_040--Hb_003895_030 Hb_007223_010 Hb_007223_010 Hb_002370_040--Hb_007223_010 Hb_100525_010 Hb_100525_010 Hb_002370_040--Hb_100525_010 Hb_059641_010 Hb_059641_010 Hb_003854_020--Hb_059641_010 Hb_000123_030 Hb_000123_030 Hb_003854_020--Hb_000123_030 Hb_009848_020 Hb_009848_020 Hb_003854_020--Hb_009848_020 Hb_003854_020--Hb_000136_190 Hb_003060_050 Hb_003060_050 Hb_003854_020--Hb_003060_050 Hb_005144_030 Hb_005144_030 Hb_000330_160--Hb_005144_030 Hb_002742_070 Hb_002742_070 Hb_000330_160--Hb_002742_070 Hb_011953_030 Hb_011953_030 Hb_000330_160--Hb_011953_030 Hb_000330_160--Hb_003814_030 Hb_001031_040 Hb_001031_040 Hb_000330_160--Hb_001031_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.3004 11.4686 2.49645 9.71424 11.1746 17.6682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.95807 1.54953

CAGE analysis