Hb_000123_030

Information

Type -
Description -
Location Contig123: 20798-34840
Sequence    

Annotation

kegg
ID rcu:RCOM_1429720
description phosphoprotein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_011023525.1
description PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
swissprot
ID O81825
description Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1
trembl
ID A0A061F1R7
description NB-ARC domain-containing disease resistance protein, putative isoform 2 OS=Theobroma cacao GN=TCM_026500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06954: 20871-20992
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_030 0.0 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
2 Hb_003854_020 0.1760284858 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
3 Hb_000123_020 0.1983674637 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At1g61190 [Vitis vinifera]
4 Hb_059641_010 0.2021822978 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
5 Hb_022880_020 0.2034710113 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
6 Hb_049958_010 0.2166354474 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
7 Hb_002471_020 0.2232329132 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
8 Hb_126506_010 0.2298223236 - - Disease resistance protein RPS5, putative [Ricinus communis]
9 Hb_003060_050 0.2303934065 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
10 Hb_006913_050 0.2306349022 - - -
11 Hb_012539_030 0.2307236344 - - PREDICTED: uncharacterized protein LOC105638247 [Jatropha curcas]
12 Hb_009897_010 0.2314637611 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
13 Hb_009848_020 0.2333858502 - - hypothetical protein VITISV_026702 [Vitis vinifera]
14 Hb_002737_020 0.2342644563 - - metallothionein [Bruguiera gymnorhiza]
15 Hb_018118_020 0.2373831273 - - unnamed protein product [Vitis vinifera]
16 Hb_144550_020 0.2510247343 - - -
17 Hb_002368_030 0.2522856366 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
18 Hb_007259_020 0.2557148967 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
19 Hb_007481_030 0.2566560096 - - PREDICTED: uncharacterized protein LOC105628433 [Jatropha curcas]
20 Hb_162074_010 0.2573964447 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]

Gene co-expression network

sample Hb_000123_030 Hb_000123_030 Hb_003854_020 Hb_003854_020 Hb_000123_030--Hb_003854_020 Hb_000123_020 Hb_000123_020 Hb_000123_030--Hb_000123_020 Hb_059641_010 Hb_059641_010 Hb_000123_030--Hb_059641_010 Hb_022880_020 Hb_022880_020 Hb_000123_030--Hb_022880_020 Hb_049958_010 Hb_049958_010 Hb_000123_030--Hb_049958_010 Hb_002471_020 Hb_002471_020 Hb_000123_030--Hb_002471_020 Hb_003854_020--Hb_059641_010 Hb_009848_020 Hb_009848_020 Hb_003854_020--Hb_009848_020 Hb_000136_190 Hb_000136_190 Hb_003854_020--Hb_000136_190 Hb_144550_020 Hb_144550_020 Hb_003854_020--Hb_144550_020 Hb_003060_050 Hb_003060_050 Hb_003854_020--Hb_003060_050 Hb_018118_020 Hb_018118_020 Hb_000123_020--Hb_018118_020 Hb_002737_020 Hb_002737_020 Hb_000123_020--Hb_002737_020 Hb_007846_040 Hb_007846_040 Hb_000123_020--Hb_007846_040 Hb_006913_050 Hb_006913_050 Hb_000123_020--Hb_006913_050 Hb_000123_020--Hb_059641_010 Hb_059641_010--Hb_049958_010 Hb_000571_150 Hb_000571_150 Hb_059641_010--Hb_000571_150 Hb_169329_010 Hb_169329_010 Hb_059641_010--Hb_169329_010 Hb_059641_010--Hb_144550_020 Hb_022880_020--Hb_003060_050 Hb_004074_030 Hb_004074_030 Hb_022880_020--Hb_004074_030 Hb_000796_050 Hb_000796_050 Hb_022880_020--Hb_000796_050 Hb_001178_040 Hb_001178_040 Hb_022880_020--Hb_001178_040 Hb_001950_020 Hb_001950_020 Hb_022880_020--Hb_001950_020 Hb_049958_010--Hb_000571_150 Hb_179679_010 Hb_179679_010 Hb_049958_010--Hb_179679_010 Hb_126506_010 Hb_126506_010 Hb_049958_010--Hb_126506_010 Hb_049958_010--Hb_169329_010 Hb_000189_470 Hb_000189_470 Hb_002471_020--Hb_000189_470 Hb_001817_130 Hb_001817_130 Hb_002471_020--Hb_001817_130 Hb_002368_030 Hb_002368_030 Hb_002471_020--Hb_002368_030 Hb_003126_020 Hb_003126_020 Hb_002471_020--Hb_003126_020 Hb_159411_010 Hb_159411_010 Hb_002471_020--Hb_159411_010 Hb_001409_050 Hb_001409_050 Hb_002471_020--Hb_001409_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.257061 0.711605 0.10229 0.286134 0.0843478 0.494381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0972511 0.166846

CAGE analysis