Hb_004074_030

Information

Type -
Description -
Location Contig4074: 83908-86301
Sequence    

Annotation

kegg
ID rcu:RCOM_1045360
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.26)
nr
ID XP_002523485.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID P17801
description Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2
trembl
ID B9SBW6
description Serine/threonine-protein kinase OS=Ricinus communis GN=RCOM_1045360 PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor protein kinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40344: 84474-84784 , PASA_asmbl_40345: 84834-84958 , PASA_asmbl_40346: 85080-85450 , PASA_asmbl_40347: 85986-86122
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004074_030 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_044086_010 0.1446838234 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_002368_030 0.1789402641 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
4 Hb_002774_150 0.1797794837 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
5 Hb_003914_030 0.1942255341 - - -
6 Hb_000991_050 0.196363924 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
7 Hb_065379_010 0.2016875138 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
8 Hb_069841_010 0.2035860986 - - resistance protein [Quercus suber]
9 Hb_000988_030 0.2040692558 - - conserved hypothetical protein [Ricinus communis]
10 Hb_132840_090 0.2086577391 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
11 Hb_009040_010 0.2127996397 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
12 Hb_022880_020 0.2150647442 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
13 Hb_005568_130 0.2189649591 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
14 Hb_002793_060 0.2197316313 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Populus euphratica]
15 Hb_002534_050 0.2227327894 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
16 Hb_004324_060 0.2289722202 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
17 Hb_002471_020 0.2319986021 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
18 Hb_000127_190 0.2331890438 - - PREDICTED: protein GIGANTEA [Jatropha curcas]
19 Hb_007423_030 0.2338520005 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
20 Hb_000185_150 0.2338812717 - - Heme-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004074_030 Hb_004074_030 Hb_044086_010 Hb_044086_010 Hb_004074_030--Hb_044086_010 Hb_002368_030 Hb_002368_030 Hb_004074_030--Hb_002368_030 Hb_002774_150 Hb_002774_150 Hb_004074_030--Hb_002774_150 Hb_003914_030 Hb_003914_030 Hb_004074_030--Hb_003914_030 Hb_000991_050 Hb_000991_050 Hb_004074_030--Hb_000991_050 Hb_065379_010 Hb_065379_010 Hb_004074_030--Hb_065379_010 Hb_044086_010--Hb_065379_010 Hb_001769_130 Hb_001769_130 Hb_044086_010--Hb_001769_130 Hb_000840_170 Hb_000840_170 Hb_044086_010--Hb_000840_170 Hb_044086_010--Hb_003914_030 Hb_000988_030 Hb_000988_030 Hb_044086_010--Hb_000988_030 Hb_002368_030--Hb_002774_150 Hb_001662_170 Hb_001662_170 Hb_002368_030--Hb_001662_170 Hb_002471_020 Hb_002471_020 Hb_002368_030--Hb_002471_020 Hb_000307_010 Hb_000307_010 Hb_002368_030--Hb_000307_010 Hb_172421_010 Hb_172421_010 Hb_002368_030--Hb_172421_010 Hb_002534_050 Hb_002534_050 Hb_002368_030--Hb_002534_050 Hb_004324_060 Hb_004324_060 Hb_002774_150--Hb_004324_060 Hb_002485_040 Hb_002485_040 Hb_002774_150--Hb_002485_040 Hb_012038_010 Hb_012038_010 Hb_002774_150--Hb_012038_010 Hb_002774_150--Hb_172421_010 Hb_004994_300 Hb_004994_300 Hb_002774_150--Hb_004994_300 Hb_012753_040 Hb_012753_040 Hb_002774_150--Hb_012753_040 Hb_003096_040 Hb_003096_040 Hb_003914_030--Hb_003096_040 Hb_153161_010 Hb_153161_010 Hb_003914_030--Hb_153161_010 Hb_003060_050 Hb_003060_050 Hb_003914_030--Hb_003060_050 Hb_001817_130 Hb_001817_130 Hb_003914_030--Hb_001817_130 Hb_178127_010 Hb_178127_010 Hb_003914_030--Hb_178127_010 Hb_001565_020 Hb_001565_020 Hb_003914_030--Hb_001565_020 Hb_000015_160 Hb_000015_160 Hb_000991_050--Hb_000015_160 Hb_000991_050--Hb_012753_040 Hb_000991_050--Hb_002774_150 Hb_009674_080 Hb_009674_080 Hb_000991_050--Hb_009674_080 Hb_000991_050--Hb_004324_060 Hb_000139_180 Hb_000139_180 Hb_000991_050--Hb_000139_180 Hb_065379_010--Hb_000840_170 Hb_065379_010--Hb_000988_030 Hb_000185_150 Hb_000185_150 Hb_065379_010--Hb_000185_150 Hb_012528_030 Hb_012528_030 Hb_065379_010--Hb_012528_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.67385 10.4569 3.68085 1.97255 2.68524 1.79144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0740836 0.0145737 0.0277573 0.318402 3.77551

CAGE analysis