Hb_002368_030

Information

Type transcription factor
Description TF Family: GRAS
Location Contig2368: 72558-74465
Sequence    

Annotation

kegg
ID pop:POPTR_0008s13090g
description POPTRDRAFT_719856; hypothetical protein
nr
ID XP_012072251.1
description PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
swissprot
ID Q8S4W7
description DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1
trembl
ID A0A067L1V6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04722 PE=4 SV=1
Gene Ontology
ID GO:0005634
description della protein gaip-b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 028_A06.ab1: 74027-74640

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002368_030 0.0 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
2 Hb_002774_150 0.1481017945 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
3 Hb_001662_170 0.1542729929 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
4 Hb_002471_020 0.1556493252 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
5 Hb_000307_010 0.1598315679 - - PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Jatropha curcas]
6 Hb_172421_010 0.1616154362 - - cysteine protease [Hevea brasiliensis]
7 Hb_002534_050 0.1719868995 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
8 Hb_002793_060 0.1739550026 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Populus euphratica]
9 Hb_003126_020 0.1767746976 - - Oligopeptide transporter, putative [Ricinus communis]
10 Hb_004074_030 0.1789402641 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_004994_300 0.1836513903 - - synaptotagmin, putative [Ricinus communis]
12 Hb_132840_090 0.1838375652 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
13 Hb_002739_070 0.1847137011 - - hypothetical protein B456_002G169900 [Gossypium raimondii]
14 Hb_004324_060 0.1852860125 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
15 Hb_004106_010 0.1869797741 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
16 Hb_001951_240 0.1881164576 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
17 Hb_005568_130 0.1881447979 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
18 Hb_000922_220 0.1883293941 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
19 Hb_002233_070 0.188676634 - - unnamed protein product [Vitis vinifera]
20 Hb_002475_130 0.1891506555 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_002368_030 Hb_002368_030 Hb_002774_150 Hb_002774_150 Hb_002368_030--Hb_002774_150 Hb_001662_170 Hb_001662_170 Hb_002368_030--Hb_001662_170 Hb_002471_020 Hb_002471_020 Hb_002368_030--Hb_002471_020 Hb_000307_010 Hb_000307_010 Hb_002368_030--Hb_000307_010 Hb_172421_010 Hb_172421_010 Hb_002368_030--Hb_172421_010 Hb_002534_050 Hb_002534_050 Hb_002368_030--Hb_002534_050 Hb_004324_060 Hb_004324_060 Hb_002774_150--Hb_004324_060 Hb_002485_040 Hb_002485_040 Hb_002774_150--Hb_002485_040 Hb_012038_010 Hb_012038_010 Hb_002774_150--Hb_012038_010 Hb_002774_150--Hb_172421_010 Hb_004994_300 Hb_004994_300 Hb_002774_150--Hb_004994_300 Hb_012753_040 Hb_012753_040 Hb_002774_150--Hb_012753_040 Hb_004106_010 Hb_004106_010 Hb_001662_170--Hb_004106_010 Hb_012787_040 Hb_012787_040 Hb_001662_170--Hb_012787_040 Hb_004032_310 Hb_004032_310 Hb_001662_170--Hb_004032_310 Hb_001053_200 Hb_001053_200 Hb_001662_170--Hb_001053_200 Hb_003752_120 Hb_003752_120 Hb_001662_170--Hb_003752_120 Hb_011360_090 Hb_011360_090 Hb_001662_170--Hb_011360_090 Hb_000189_470 Hb_000189_470 Hb_002471_020--Hb_000189_470 Hb_001817_130 Hb_001817_130 Hb_002471_020--Hb_001817_130 Hb_003126_020 Hb_003126_020 Hb_002471_020--Hb_003126_020 Hb_159411_010 Hb_159411_010 Hb_002471_020--Hb_159411_010 Hb_001409_050 Hb_001409_050 Hb_002471_020--Hb_001409_050 Hb_000065_090 Hb_000065_090 Hb_000307_010--Hb_000065_090 Hb_004116_180 Hb_004116_180 Hb_000307_010--Hb_004116_180 Hb_004013_020 Hb_004013_020 Hb_000307_010--Hb_004013_020 Hb_000567_240 Hb_000567_240 Hb_000307_010--Hb_000567_240 Hb_000307_010--Hb_004994_300 Hb_172421_010--Hb_004324_060 Hb_002248_120 Hb_002248_120 Hb_172421_010--Hb_002248_120 Hb_001951_240 Hb_001951_240 Hb_172421_010--Hb_001951_240 Hb_172421_010--Hb_004994_300 Hb_007313_070 Hb_007313_070 Hb_172421_010--Hb_007313_070 Hb_013405_180 Hb_013405_180 Hb_172421_010--Hb_013405_180 Hb_009040_010 Hb_009040_010 Hb_002534_050--Hb_009040_010 Hb_000071_140 Hb_000071_140 Hb_002534_050--Hb_000071_140 Hb_002534_050--Hb_001662_170 Hb_002534_050--Hb_011360_090 Hb_001489_120 Hb_001489_120 Hb_002534_050--Hb_001489_120 Hb_001258_150 Hb_001258_150 Hb_002534_050--Hb_001258_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.6798 106.727 25.195 27.4205 10.272 20.3385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.23318 1.29112 0.0354375 13.4807 41.9766

CAGE analysis