Hb_009040_010

Information

Type transcription factor
Description TF Family: C2C2-CO-like
Location Contig9040: 25439-26991
Sequence    

Annotation

kegg
ID rcu:RCOM_0025300
description zinc finger protein, putative
nr
ID XP_002533687.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9FHH8
description Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2
trembl
ID B9T618
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0025300 PE=4 SV=1
Gene Ontology
ID GO:0003700
description constans-like 7 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61986: 25472-26996 , PASA_asmbl_61987: 25472-26991
cDNA
(Sanger)
(ID:Location)		 004_O08.ab1: 25472-26066

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009040_010 0.0 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
2 Hb_002534_050 0.089809175 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
3 Hb_011360_090 0.1030159876 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
4 Hb_001258_150 0.1184437786 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
5 Hb_000071_140 0.1212932918 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
6 Hb_132840_090 0.1230829986 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
7 Hb_001662_170 0.1268047416 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
8 Hb_010589_130 0.1328950806 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
9 Hb_001489_120 0.1354566629 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
10 Hb_001989_060 0.1374445261 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
11 Hb_056012_010 0.141623755 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
12 Hb_000803_060 0.1449705691 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
13 Hb_003216_050 0.1471130152 - - PREDICTED: OBERON-like protein [Jatropha curcas]
14 Hb_012787_040 0.1479999465 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
15 Hb_000805_040 0.1486499269 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
16 Hb_000069_730 0.1516807969 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X1 [Jatropha curcas]
17 Hb_004712_160 0.1521587479 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
18 Hb_004106_010 0.1557263386 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
19 Hb_005568_130 0.1561457437 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
20 Hb_003226_080 0.1588087595 - - PREDICTED: RING-H2 finger protein ATL5-like [Jatropha curcas]

Gene co-expression network

sample Hb_009040_010 Hb_009040_010 Hb_002534_050 Hb_002534_050 Hb_009040_010--Hb_002534_050 Hb_011360_090 Hb_011360_090 Hb_009040_010--Hb_011360_090 Hb_001258_150 Hb_001258_150 Hb_009040_010--Hb_001258_150 Hb_000071_140 Hb_000071_140 Hb_009040_010--Hb_000071_140 Hb_132840_090 Hb_132840_090 Hb_009040_010--Hb_132840_090 Hb_001662_170 Hb_001662_170 Hb_009040_010--Hb_001662_170 Hb_002534_050--Hb_000071_140 Hb_002534_050--Hb_001662_170 Hb_002534_050--Hb_011360_090 Hb_001489_120 Hb_001489_120 Hb_002534_050--Hb_001489_120 Hb_002534_050--Hb_001258_150 Hb_012787_040 Hb_012787_040 Hb_011360_090--Hb_012787_040 Hb_000805_040 Hb_000805_040 Hb_011360_090--Hb_000805_040 Hb_011360_090--Hb_001662_170 Hb_000803_060 Hb_000803_060 Hb_011360_090--Hb_000803_060 Hb_006414_020 Hb_006414_020 Hb_011360_090--Hb_006414_020 Hb_001258_150--Hb_001489_120 Hb_001258_150--Hb_000803_060 Hb_004032_310 Hb_004032_310 Hb_001258_150--Hb_004032_310 Hb_012725_040 Hb_012725_040 Hb_001258_150--Hb_012725_040 Hb_001258_150--Hb_000071_140 Hb_001258_150--Hb_011360_090 Hb_000071_140--Hb_001489_120 Hb_048755_020 Hb_048755_020 Hb_000071_140--Hb_048755_020 Hb_000069_730 Hb_000069_730 Hb_000071_140--Hb_000069_730 Hb_000071_140--Hb_004032_310 Hb_027402_100 Hb_027402_100 Hb_132840_090--Hb_027402_100 Hb_004218_080 Hb_004218_080 Hb_132840_090--Hb_004218_080 Hb_132840_090--Hb_011360_090 Hb_132840_090--Hb_001662_170 Hb_132840_090--Hb_002534_050 Hb_004106_010 Hb_004106_010 Hb_001662_170--Hb_004106_010 Hb_001662_170--Hb_012787_040 Hb_001662_170--Hb_004032_310 Hb_001053_200 Hb_001053_200 Hb_001662_170--Hb_001053_200 Hb_003752_120 Hb_003752_120 Hb_001662_170--Hb_003752_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.3238 455.233 156.607 94.1879 42.4052 36.7596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.734 6.36716 6.97159 23.7793 61.4114

CAGE analysis