Hb_001817_130

Information

Type -
Description -
Location Contig1817: 106836-107458
Sequence    

Annotation

kegg
ID cmo:103500369
description poly [ADP-ribose] polymerase 1
nr
ID XP_008461881.1
description PREDICTED: poly [ADP-ribose] polymerase 1 isoform X3 [Cucumis melo]
swissprot
ID Q9ZP54
description Poly [ADP-ribose] polymerase 1 OS=Arabidopsis thaliana GN=PARP1 PE=1 SV=2
trembl
ID A5AIW8
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037618 PE=4 SV=1
Gene Ontology
ID GO:0005634
description poly

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001817_130 0.0 - - PREDICTED: poly [ADP-ribose] polymerase 1 isoform X3 [Cucumis melo]
2 Hb_002471_020 0.1500608525 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
3 Hb_001114_020 0.1534590818 desease resistance Gene Name: LRR_4 Disease resistance protein RPM1, putative [Ricinus communis]
4 Hb_000165_120 0.1543607707 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
5 Hb_087587_010 0.1618097575 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_001091_030 0.1777989122 - - hypothetical protein AALP_AA1G173500 [Arabis alpina]
7 Hb_003914_030 0.1900600208 - - -
8 Hb_001409_050 0.1907172958 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_025964_040 0.1981318597 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
10 Hb_000165_110 0.2003682935 - - unknown [Medicago truncatula]
11 Hb_159411_010 0.2004122665 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
12 Hb_000362_090 0.2023002531 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
13 Hb_048848_010 0.2048032662 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
14 Hb_010346_020 0.2086931226 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
15 Hb_001369_770 0.2098790833 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
16 Hb_005464_030 0.2104686094 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_020178_050 0.212643533 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
18 Hb_002740_040 0.2140649094 - - hypothetical protein POPTR_0005s00350g [Populus trichocarpa]
19 Hb_001622_010 0.2182558217 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_005724_050 0.21837631 - - -

Gene co-expression network

sample Hb_001817_130 Hb_001817_130 Hb_002471_020 Hb_002471_020 Hb_001817_130--Hb_002471_020 Hb_001114_020 Hb_001114_020 Hb_001817_130--Hb_001114_020 Hb_000165_120 Hb_000165_120 Hb_001817_130--Hb_000165_120 Hb_087587_010 Hb_087587_010 Hb_001817_130--Hb_087587_010 Hb_001091_030 Hb_001091_030 Hb_001817_130--Hb_001091_030 Hb_003914_030 Hb_003914_030 Hb_001817_130--Hb_003914_030 Hb_000189_470 Hb_000189_470 Hb_002471_020--Hb_000189_470 Hb_002368_030 Hb_002368_030 Hb_002471_020--Hb_002368_030 Hb_003126_020 Hb_003126_020 Hb_002471_020--Hb_003126_020 Hb_159411_010 Hb_159411_010 Hb_002471_020--Hb_159411_010 Hb_001409_050 Hb_001409_050 Hb_002471_020--Hb_001409_050 Hb_001114_020--Hb_000165_120 Hb_000165_110 Hb_000165_110 Hb_001114_020--Hb_000165_110 Hb_007777_010 Hb_007777_010 Hb_001114_020--Hb_007777_010 Hb_025964_040 Hb_025964_040 Hb_001114_020--Hb_025964_040 Hb_010346_020 Hb_010346_020 Hb_001114_020--Hb_010346_020 Hb_000165_120--Hb_087587_010 Hb_002259_110 Hb_002259_110 Hb_000165_120--Hb_002259_110 Hb_001373_160 Hb_001373_160 Hb_000165_120--Hb_001373_160 Hb_000165_120--Hb_000165_110 Hb_000165_120--Hb_010346_020 Hb_002553_010 Hb_002553_010 Hb_000165_120--Hb_002553_010 Hb_002740_040 Hb_002740_040 Hb_087587_010--Hb_002740_040 Hb_000917_100 Hb_000917_100 Hb_087587_010--Hb_000917_100 Hb_087587_010--Hb_010346_020 Hb_087587_010--Hb_002259_110 Hb_004837_050 Hb_004837_050 Hb_087587_010--Hb_004837_050 Hb_048848_010 Hb_048848_010 Hb_001091_030--Hb_048848_010 Hb_010398_010 Hb_010398_010 Hb_001091_030--Hb_010398_010 Hb_001091_030--Hb_159411_010 Hb_000362_090 Hb_000362_090 Hb_001091_030--Hb_000362_090 Hb_007380_040 Hb_007380_040 Hb_001091_030--Hb_007380_040 Hb_003096_040 Hb_003096_040 Hb_003914_030--Hb_003096_040 Hb_153161_010 Hb_153161_010 Hb_003914_030--Hb_153161_010 Hb_003060_050 Hb_003060_050 Hb_003914_030--Hb_003060_050 Hb_178127_010 Hb_178127_010 Hb_003914_030--Hb_178127_010 Hb_001565_020 Hb_001565_020 Hb_003914_030--Hb_001565_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15262 2.25266 1.22876 0.863166 0.542031 0.60465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.09253 0.470216

CAGE analysis