Hb_025964_040

Information

Type -
Description -
Location Contig25964: 30629-31174
Sequence    

Annotation

kegg
ID rcu:RCOM_1279080
description hypothetical protein
nr
ID XP_012076227.1
description PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
swissprot
ID Q9M8T3
description Putative gamma-glutamylcyclotransferase At3g02910 OS=Arabidopsis thaliana GN=At3g02910 PE=2 SV=2
trembl
ID A0A067KPT8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12643 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025964_040 0.0 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
2 Hb_000242_030 0.1464782155 - - PREDICTED: uncharacterized protein LOC102608003 [Citrus sinensis]
3 Hb_007777_010 0.148093166 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Tarenaya hassleriana]
4 Hb_001114_020 0.1621891363 desease resistance Gene Name: LRR_4 Disease resistance protein RPM1, putative [Ricinus communis]
5 Hb_087587_010 0.1668660844 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_000045_160 0.1689056976 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
7 Hb_000631_090 0.1691674891 - - PREDICTED: uncharacterized protein LOC105640619 [Jatropha curcas]
8 Hb_010346_020 0.1729542011 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
9 Hb_001621_110 0.1755556365 - - PREDICTED: uncharacterized protein LOC105647362 [Jatropha curcas]
10 Hb_001277_040 0.1764236705 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
11 Hb_002740_040 0.1767533911 - - hypothetical protein POPTR_0005s00350g [Populus trichocarpa]
12 Hb_054865_020 0.183201852 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
13 Hb_011930_100 0.1844866734 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
14 Hb_032202_050 0.1846811666 transcription factor TF Family: TCP conserved hypothetical protein [Ricinus communis]
15 Hb_020805_100 0.1875946055 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
16 Hb_009745_010 0.1887263835 - - cellulose synthase-like protein [Populus tomentosa]
17 Hb_114943_020 0.1893155508 - - PREDICTED: NADPH--cytochrome P450 reductase 2 [Jatropha curcas]
18 Hb_000470_110 0.1909096275 - - PREDICTED: probable LIM domain-containing serine/threonine-protein kinase DDB_G0287001 [Jatropha curcas]
19 Hb_000196_010 0.1931972048 - - Patellin-5, putative [Ricinus communis]
20 Hb_161549_010 0.1935766461 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_025964_040 Hb_025964_040 Hb_000242_030 Hb_000242_030 Hb_025964_040--Hb_000242_030 Hb_007777_010 Hb_007777_010 Hb_025964_040--Hb_007777_010 Hb_001114_020 Hb_001114_020 Hb_025964_040--Hb_001114_020 Hb_087587_010 Hb_087587_010 Hb_025964_040--Hb_087587_010 Hb_000045_160 Hb_000045_160 Hb_025964_040--Hb_000045_160 Hb_000631_090 Hb_000631_090 Hb_025964_040--Hb_000631_090 Hb_004837_050 Hb_004837_050 Hb_000242_030--Hb_004837_050 Hb_000242_030--Hb_000045_160 Hb_000470_110 Hb_000470_110 Hb_000242_030--Hb_000470_110 Hb_000523_030 Hb_000523_030 Hb_000242_030--Hb_000523_030 Hb_000242_030--Hb_000631_090 Hb_001621_110 Hb_001621_110 Hb_007777_010--Hb_001621_110 Hb_004267_060 Hb_004267_060 Hb_007777_010--Hb_004267_060 Hb_152910_010 Hb_152910_010 Hb_007777_010--Hb_152910_010 Hb_007777_010--Hb_000045_160 Hb_000640_190 Hb_000640_190 Hb_007777_010--Hb_000640_190 Hb_010287_030 Hb_010287_030 Hb_007777_010--Hb_010287_030 Hb_000165_120 Hb_000165_120 Hb_001114_020--Hb_000165_120 Hb_000165_110 Hb_000165_110 Hb_001114_020--Hb_000165_110 Hb_001817_130 Hb_001817_130 Hb_001114_020--Hb_001817_130 Hb_001114_020--Hb_007777_010 Hb_010346_020 Hb_010346_020 Hb_001114_020--Hb_010346_020 Hb_002740_040 Hb_002740_040 Hb_087587_010--Hb_002740_040 Hb_087587_010--Hb_000165_120 Hb_000917_100 Hb_000917_100 Hb_087587_010--Hb_000917_100 Hb_087587_010--Hb_010346_020 Hb_002259_110 Hb_002259_110 Hb_087587_010--Hb_002259_110 Hb_087587_010--Hb_004837_050 Hb_000045_160--Hb_000640_190 Hb_011930_100 Hb_011930_100 Hb_000045_160--Hb_011930_100 Hb_033152_090 Hb_033152_090 Hb_000045_160--Hb_033152_090 Hb_088584_010 Hb_088584_010 Hb_000045_160--Hb_088584_010 Hb_002249_020 Hb_002249_020 Hb_000045_160--Hb_002249_020 Hb_000815_310 Hb_000815_310 Hb_000045_160--Hb_000815_310 Hb_000631_090--Hb_000045_160 Hb_054865_020 Hb_054865_020 Hb_000631_090--Hb_054865_020 Hb_000631_090--Hb_000470_110 Hb_000631_090--Hb_011930_100 Hb_002307_080 Hb_002307_080 Hb_000631_090--Hb_002307_080 Hb_000803_090 Hb_000803_090 Hb_000631_090--Hb_000803_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.66045 10.5295 9.25615 7.79012 1.53791 4.5931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.116577 0.458007 0.315591 2.60833 4.70813

CAGE analysis