Hb_010346_020

Information

Type -
Description -
Location Contig10346: 15027-23542
Sequence    

Annotation

kegg
ID pop:POPTR_0007s05040g
description POPTRDRAFT_764109; hypothetical protein
nr
ID XP_012081621.1
description PREDICTED: protein SCAI homolog [Jatropha curcas]
swissprot
ID Q8N9R8
description Protein SCAI OS=Homo sapiens GN=SCAI PE=1 SV=2
trembl
ID A0A067K0K9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18661 PE=4 SV=1
Gene Ontology
ID GO:0003714
description protein scai-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01357: 20794-21164 , PASA_asmbl_01358: 21653-21885 , PASA_asmbl_01359: 15706-23423
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010346_020 0.0 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
2 Hb_096819_010 0.1191448475 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
3 Hb_000345_490 0.1196074874 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
4 Hb_000988_030 0.1273681703 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002259_110 0.1301557696 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
6 Hb_001484_100 0.131888207 - - PREDICTED: cyanate hydratase [Jatropha curcas]
7 Hb_010287_030 0.1326224699 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007777_010 0.1370090293 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Tarenaya hassleriana]
9 Hb_005054_310 0.1378249168 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
10 Hb_003895_020 0.1381052244 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
11 Hb_087587_010 0.1381915701 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
12 Hb_000165_120 0.1395212104 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
13 Hb_005649_090 0.1404413092 - - PREDICTED: ninja-family protein AFP3-like [Jatropha curcas]
14 Hb_005054_190 0.1408636698 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
15 Hb_030545_030 0.1411484018 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
16 Hb_012305_140 0.1412150259 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
17 Hb_000890_010 0.1420378029 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000024_120 0.1427475549 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
19 Hb_054865_020 0.1428600883 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
20 Hb_011920_020 0.1430303622 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]

Gene co-expression network

sample Hb_010346_020 Hb_010346_020 Hb_096819_010 Hb_096819_010 Hb_010346_020--Hb_096819_010 Hb_000345_490 Hb_000345_490 Hb_010346_020--Hb_000345_490 Hb_000988_030 Hb_000988_030 Hb_010346_020--Hb_000988_030 Hb_002259_110 Hb_002259_110 Hb_010346_020--Hb_002259_110 Hb_001484_100 Hb_001484_100 Hb_010346_020--Hb_001484_100 Hb_010287_030 Hb_010287_030 Hb_010346_020--Hb_010287_030 Hb_030545_030 Hb_030545_030 Hb_096819_010--Hb_030545_030 Hb_002903_140 Hb_002903_140 Hb_096819_010--Hb_002903_140 Hb_008165_030 Hb_008165_030 Hb_096819_010--Hb_008165_030 Hb_000958_150 Hb_000958_150 Hb_096819_010--Hb_000958_150 Hb_011920_020 Hb_011920_020 Hb_096819_010--Hb_011920_020 Hb_002902_020 Hb_002902_020 Hb_096819_010--Hb_002902_020 Hb_000024_120 Hb_000024_120 Hb_000345_490--Hb_000024_120 Hb_005610_080 Hb_005610_080 Hb_000345_490--Hb_005610_080 Hb_000345_490--Hb_002902_020 Hb_001454_220 Hb_001454_220 Hb_000345_490--Hb_001454_220 Hb_000625_120 Hb_000625_120 Hb_000345_490--Hb_000625_120 Hb_005054_190 Hb_005054_190 Hb_000345_490--Hb_005054_190 Hb_000185_150 Hb_000185_150 Hb_000988_030--Hb_000185_150 Hb_065379_010 Hb_065379_010 Hb_000988_030--Hb_065379_010 Hb_003638_010 Hb_003638_010 Hb_000988_030--Hb_003638_010 Hb_000732_070 Hb_000732_070 Hb_000988_030--Hb_000732_070 Hb_000988_030--Hb_000345_490 Hb_002553_010 Hb_002553_010 Hb_002259_110--Hb_002553_010 Hb_152910_010 Hb_152910_010 Hb_002259_110--Hb_152910_010 Hb_001133_090 Hb_001133_090 Hb_002259_110--Hb_001133_090 Hb_075203_010 Hb_075203_010 Hb_002259_110--Hb_075203_010 Hb_000134_250 Hb_000134_250 Hb_002259_110--Hb_000134_250 Hb_001373_160 Hb_001373_160 Hb_002259_110--Hb_001373_160 Hb_005054_310 Hb_005054_310 Hb_001484_100--Hb_005054_310 Hb_000836_370 Hb_000836_370 Hb_001484_100--Hb_000836_370 Hb_085364_010 Hb_085364_010 Hb_001484_100--Hb_085364_010 Hb_003078_030 Hb_003078_030 Hb_001484_100--Hb_003078_030 Hb_005649_090 Hb_005649_090 Hb_001484_100--Hb_005649_090 Hb_001484_100--Hb_030545_030 Hb_004724_370 Hb_004724_370 Hb_010287_030--Hb_004724_370 Hb_000302_170 Hb_000302_170 Hb_010287_030--Hb_000302_170 Hb_010287_030--Hb_008165_030 Hb_001674_040 Hb_001674_040 Hb_010287_030--Hb_001674_040 Hb_010287_030--Hb_030545_030 Hb_006573_160 Hb_006573_160 Hb_010287_030--Hb_006573_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.71917 15.0636 13.1342 5.3204 5.1632 8.68742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.52488 0.745225 0.603037 4.66181 5.16479

CAGE analysis