Hb_000988_030

Information

Type -
Description -
Location Contig988: 43683-44699
Sequence    

Annotation

kegg
ID rcu:RCOM_0906800
description hypothetical protein
nr
ID XP_002518589.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FKA5
description Uncharacterized protein At5g39570 OS=Arabidopsis thaliana GN=At5g39570 PE=1 SV=1
trembl
ID B9RXX0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0906800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000988_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000185_150 0.1092770702 - - Heme-binding protein, putative [Ricinus communis]
3 Hb_010346_020 0.1273681703 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
4 Hb_065379_010 0.1409961437 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
5 Hb_003638_010 0.1418873065 transcription factor TF Family: ARID PREDICTED: lysine-specific demethylase 5B isoform X2 [Jatropha curcas]
6 Hb_000732_070 0.144271561 - - PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
7 Hb_000345_490 0.1457212775 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
8 Hb_000538_260 0.1464579549 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
9 Hb_020805_100 0.153898119 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
10 Hb_069841_010 0.1545500278 - - resistance protein [Quercus suber]
11 Hb_000086_050 0.1562693208 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]
12 Hb_000024_120 0.1596132144 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
13 Hb_003001_040 0.1601301135 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
14 Hb_002902_020 0.1621906993 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
15 Hb_018202_050 0.16374739 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A [Jatropha curcas]
16 Hb_000997_150 0.1649693374 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_006573_160 0.1674201472 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
18 Hb_000116_510 0.1689583688 - - PREDICTED: RNA-binding protein 24-A-like isoform X2 [Jatropha curcas]
19 Hb_096819_010 0.1697868142 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
20 Hb_002471_180 0.1712028012 - - receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000988_030 Hb_000988_030 Hb_000185_150 Hb_000185_150 Hb_000988_030--Hb_000185_150 Hb_010346_020 Hb_010346_020 Hb_000988_030--Hb_010346_020 Hb_065379_010 Hb_065379_010 Hb_000988_030--Hb_065379_010 Hb_003638_010 Hb_003638_010 Hb_000988_030--Hb_003638_010 Hb_000732_070 Hb_000732_070 Hb_000988_030--Hb_000732_070 Hb_000345_490 Hb_000345_490 Hb_000988_030--Hb_000345_490 Hb_000086_050 Hb_000086_050 Hb_000185_150--Hb_000086_050 Hb_000024_120 Hb_000024_120 Hb_000185_150--Hb_000024_120 Hb_000185_150--Hb_003638_010 Hb_009449_090 Hb_009449_090 Hb_000185_150--Hb_009449_090 Hb_005054_190 Hb_005054_190 Hb_000185_150--Hb_005054_190 Hb_096819_010 Hb_096819_010 Hb_010346_020--Hb_096819_010 Hb_010346_020--Hb_000345_490 Hb_002259_110 Hb_002259_110 Hb_010346_020--Hb_002259_110 Hb_001484_100 Hb_001484_100 Hb_010346_020--Hb_001484_100 Hb_010287_030 Hb_010287_030 Hb_010346_020--Hb_010287_030 Hb_000840_170 Hb_000840_170 Hb_065379_010--Hb_000840_170 Hb_065379_010--Hb_000185_150 Hb_012528_030 Hb_012528_030 Hb_065379_010--Hb_012528_030 Hb_044086_010 Hb_044086_010 Hb_065379_010--Hb_044086_010 Hb_004074_030 Hb_004074_030 Hb_065379_010--Hb_004074_030 Hb_002571_030 Hb_002571_030 Hb_003638_010--Hb_002571_030 Hb_007818_040 Hb_007818_040 Hb_003638_010--Hb_007818_040 Hb_007305_020 Hb_007305_020 Hb_003638_010--Hb_007305_020 Hb_003638_010--Hb_009449_090 Hb_003638_010--Hb_000024_120 Hb_006573_160 Hb_006573_160 Hb_003638_010--Hb_006573_160 Hb_020805_100 Hb_020805_100 Hb_000732_070--Hb_020805_100 Hb_000732_070--Hb_000086_050 Hb_003895_020 Hb_003895_020 Hb_000732_070--Hb_003895_020 Hb_002400_230 Hb_002400_230 Hb_000732_070--Hb_002400_230 Hb_000334_130 Hb_000334_130 Hb_000732_070--Hb_000334_130 Hb_000732_070--Hb_006573_160 Hb_000345_490--Hb_000024_120 Hb_005610_080 Hb_005610_080 Hb_000345_490--Hb_005610_080 Hb_002902_020 Hb_002902_020 Hb_000345_490--Hb_002902_020 Hb_001454_220 Hb_001454_220 Hb_000345_490--Hb_001454_220 Hb_000625_120 Hb_000625_120 Hb_000345_490--Hb_000625_120 Hb_000345_490--Hb_005054_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
92.8119 172.783 135.785 70.2487 88.6915 85.1468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.691 6.51815 3.23642 25.1193 104.086

CAGE analysis