Hb_000840_170

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig840: 117376-119089
Sequence    

Annotation

kegg
ID pop:POPTR_0001s31660g
description POPTRDRAFT_175065; hypothetical protein
nr
ID XP_012075316.1
description PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
swissprot
ID Q39117
description Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1
trembl
ID A0A067KGU3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09486 PE=4 SV=1
Gene Ontology
ID GO:0005488
description trihelix transcription factor gt-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60080: 118205-119141
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000840_170 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
2 Hb_065379_010 0.0945746323 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
3 Hb_000185_150 0.1940290992 - - Heme-binding protein, putative [Ricinus communis]
4 Hb_012528_030 0.1980256101 - - -
5 Hb_044086_010 0.2012271156 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000988_030 0.2130681784 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005529_030 0.2332923731 - - PREDICTED: cytochrome P450 94A1-like [Populus euphratica]
8 Hb_045870_010 0.2386725077 - - -
9 Hb_003914_030 0.2414943502 - - -
10 Hb_000317_060 0.2484838306 - - PREDICTED: uncharacterized protein LOC105647051 [Jatropha curcas]
11 Hb_003992_030 0.2494704626 - - Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Gossypium arboreum]
12 Hb_000283_120 0.2519928313 - - PREDICTED: uncharacterized protein LOC105647704 [Jatropha curcas]
13 Hb_003638_010 0.2525454929 transcription factor TF Family: ARID PREDICTED: lysine-specific demethylase 5B isoform X2 [Jatropha curcas]
14 Hb_004074_030 0.2538449779 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000347_270 0.2548256787 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
16 Hb_000358_140 0.2550187911 - - conserved hypothetical protein [Ricinus communis]
17 Hb_013016_020 0.255699276 - - Disease resistance protein RPS2, putative [Ricinus communis]
18 Hb_000538_260 0.255779812 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
19 Hb_003994_100 0.2571326496 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
20 Hb_000086_050 0.2574298286 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000840_170 Hb_000840_170 Hb_065379_010 Hb_065379_010 Hb_000840_170--Hb_065379_010 Hb_000185_150 Hb_000185_150 Hb_000840_170--Hb_000185_150 Hb_012528_030 Hb_012528_030 Hb_000840_170--Hb_012528_030 Hb_044086_010 Hb_044086_010 Hb_000840_170--Hb_044086_010 Hb_000988_030 Hb_000988_030 Hb_000840_170--Hb_000988_030 Hb_005529_030 Hb_005529_030 Hb_000840_170--Hb_005529_030 Hb_065379_010--Hb_000988_030 Hb_065379_010--Hb_000185_150 Hb_065379_010--Hb_012528_030 Hb_065379_010--Hb_044086_010 Hb_004074_030 Hb_004074_030 Hb_065379_010--Hb_004074_030 Hb_000086_050 Hb_000086_050 Hb_000185_150--Hb_000086_050 Hb_000024_120 Hb_000024_120 Hb_000185_150--Hb_000024_120 Hb_003638_010 Hb_003638_010 Hb_000185_150--Hb_003638_010 Hb_000185_150--Hb_000988_030 Hb_009449_090 Hb_009449_090 Hb_000185_150--Hb_009449_090 Hb_005054_190 Hb_005054_190 Hb_000185_150--Hb_005054_190 Hb_012528_020 Hb_012528_020 Hb_012528_030--Hb_012528_020 Hb_000327_080 Hb_000327_080 Hb_012528_030--Hb_000327_080 Hb_021537_010 Hb_021537_010 Hb_012528_030--Hb_021537_010 Hb_176368_010 Hb_176368_010 Hb_012528_030--Hb_176368_010 Hb_004254_100 Hb_004254_100 Hb_012528_030--Hb_004254_100 Hb_012528_030--Hb_009449_090 Hb_044086_010--Hb_004074_030 Hb_001769_130 Hb_001769_130 Hb_044086_010--Hb_001769_130 Hb_003914_030 Hb_003914_030 Hb_044086_010--Hb_003914_030 Hb_044086_010--Hb_000988_030 Hb_010346_020 Hb_010346_020 Hb_000988_030--Hb_010346_020 Hb_000988_030--Hb_003638_010 Hb_000732_070 Hb_000732_070 Hb_000988_030--Hb_000732_070 Hb_000345_490 Hb_000345_490 Hb_000988_030--Hb_000345_490 Hb_054865_060 Hb_054865_060 Hb_005529_030--Hb_054865_060 Hb_005534_030 Hb_005534_030 Hb_005529_030--Hb_005534_030 Hb_001307_040 Hb_001307_040 Hb_005529_030--Hb_001307_040 Hb_003900_030 Hb_003900_030 Hb_005529_030--Hb_003900_030 Hb_002027_090 Hb_002027_090 Hb_005529_030--Hb_002027_090 Hb_005271_160 Hb_005271_160 Hb_005529_030--Hb_005271_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.1452 39.7418 16.3999 5.45275 22.1604 17.0747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.50717 0.491237 0 5.95083 35.5115

CAGE analysis