Hb_021537_010

Information

Type -
Description -
Location Contig21537: 3832-11337
Sequence    

Annotation

kegg
ID rcu:RCOM_0653390
description hypothetical protein
nr
ID XP_012068895.1
description PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KX71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24711 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22266: 5739-6459 , PASA_asmbl_22267: 6504-7370
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021537_010 0.0 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
2 Hb_000826_070 0.0920388096 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000664_120 0.095950754 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
4 Hb_001999_140 0.0987147979 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_001953_120 0.118164318 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
6 Hb_005211_020 0.119220095 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
7 Hb_000029_350 0.1193888476 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
8 Hb_000856_070 0.1210555683 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
9 Hb_000377_050 0.1215270835 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
10 Hb_065408_010 0.1220464063 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
11 Hb_000008_410 0.1226467986 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
12 Hb_000568_050 0.123554709 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
13 Hb_004619_060 0.125938314 - - PREDICTED: uncharacterized protein At1g10890-like [Nelumbo nucifera]
14 Hb_003124_100 0.1266271292 - - -
15 Hb_002968_070 0.1282677221 - - PREDICTED: transcription initiation factor TFIID subunit 4b isoform X2 [Jatropha curcas]
16 Hb_001221_180 0.1285914049 - - calcineurin-like phosphoesterase [Manihot esculenta]
17 Hb_013405_160 0.1317118507 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
18 Hb_179154_020 0.131745463 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
19 Hb_004294_020 0.1317718051 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
20 Hb_000196_060 0.1327326574 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]

Gene co-expression network

sample Hb_021537_010 Hb_021537_010 Hb_000826_070 Hb_000826_070 Hb_021537_010--Hb_000826_070 Hb_000664_120 Hb_000664_120 Hb_021537_010--Hb_000664_120 Hb_001999_140 Hb_001999_140 Hb_021537_010--Hb_001999_140 Hb_001953_120 Hb_001953_120 Hb_021537_010--Hb_001953_120 Hb_005211_020 Hb_005211_020 Hb_021537_010--Hb_005211_020 Hb_000029_350 Hb_000029_350 Hb_021537_010--Hb_000029_350 Hb_000826_070--Hb_001999_140 Hb_013459_020 Hb_013459_020 Hb_000826_070--Hb_013459_020 Hb_000826_070--Hb_000664_120 Hb_000826_070--Hb_005211_020 Hb_000568_050 Hb_000568_050 Hb_000826_070--Hb_000568_050 Hb_012055_110 Hb_012055_110 Hb_000826_070--Hb_012055_110 Hb_005701_050 Hb_005701_050 Hb_000664_120--Hb_005701_050 Hb_000664_120--Hb_001999_140 Hb_000934_210 Hb_000934_210 Hb_000664_120--Hb_000934_210 Hb_000035_100 Hb_000035_100 Hb_000664_120--Hb_000035_100 Hb_002461_020 Hb_002461_020 Hb_000664_120--Hb_002461_020 Hb_001999_140--Hb_013459_020 Hb_001221_180 Hb_001221_180 Hb_001999_140--Hb_001221_180 Hb_003093_040 Hb_003093_040 Hb_001999_140--Hb_003093_040 Hb_002357_070 Hb_002357_070 Hb_001999_140--Hb_002357_070 Hb_003142_040 Hb_003142_040 Hb_001953_120--Hb_003142_040 Hb_002968_070 Hb_002968_070 Hb_001953_120--Hb_002968_070 Hb_004223_160 Hb_004223_160 Hb_001953_120--Hb_004223_160 Hb_088144_020 Hb_088144_020 Hb_001953_120--Hb_088144_020 Hb_005832_010 Hb_005832_010 Hb_001953_120--Hb_005832_010 Hb_001953_120--Hb_000934_210 Hb_002600_060 Hb_002600_060 Hb_005211_020--Hb_002600_060 Hb_002973_110 Hb_002973_110 Hb_005211_020--Hb_002973_110 Hb_000608_300 Hb_000608_300 Hb_005211_020--Hb_000608_300 Hb_005211_020--Hb_013459_020 Hb_000925_090 Hb_000925_090 Hb_005211_020--Hb_000925_090 Hb_000029_350--Hb_000826_070 Hb_001789_040 Hb_001789_040 Hb_000029_350--Hb_001789_040 Hb_179154_020 Hb_179154_020 Hb_000029_350--Hb_179154_020 Hb_000029_350--Hb_002600_060 Hb_000029_350--Hb_000568_050 Hb_001244_150 Hb_001244_150 Hb_000029_350--Hb_001244_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.26988 1.86911 1.25251 0.767643 1.12027 0.587551
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.545658 0.506031 0.233403 1.61478 2.43936

CAGE analysis