Hb_000029_350

Information

Type rubber biosynthesis
Description Gene Name: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Location Contig29: 308061-311652
Sequence    

Annotation

kegg
ID rcu:RCOM_0938310
description 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative (EC:1.17.1.2)
nr
ID BAF98297.1
description 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
swissprot
ID Q94B35
description 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=ISPH PE=2 SV=1
trembl
ID A9ZN15
description 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Hevea brasiliensis GN=HbHDR PE=2 SV=1
Gene Ontology
ID GO:0046872
description 4-hydroxy-3-methylbut-2-enyl diphosphate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30378: 308121-308333 , PASA_asmbl_30379: 308362-311417
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_350 0.0 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
2 Hb_000826_070 0.0851187914 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001789_040 0.086117436 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
4 Hb_179154_020 0.0895961327 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
5 Hb_002600_060 0.0922772835 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
6 Hb_000568_050 0.0923150154 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
7 Hb_001244_150 0.0952462108 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
8 Hb_000563_420 0.0953368444 - - PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
9 Hb_012055_110 0.0967554727 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
10 Hb_007635_040 0.0970262097 - - PREDICTED: WAT1-related protein At3g45870 isoform X1 [Jatropha curcas]
11 Hb_005211_020 0.0977442958 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
12 Hb_003124_100 0.0979165735 - - -
13 Hb_002007_110 0.0980927327 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
14 Hb_001005_130 0.0993148582 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
15 Hb_002636_110 0.1005130558 - - PREDICTED: heat shock protein 83-like isoform X2 [Gossypium raimondii]
16 Hb_000205_260 0.1005233857 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
17 Hb_004920_090 0.1009836456 - - PREDICTED: probable glutamyl endopeptidase, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_007044_110 0.1027874399 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_004306_030 0.1030699911 - - PREDICTED: GPI transamidase component PIG-S [Jatropha curcas]
20 Hb_007305_020 0.1032793914 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000029_350 Hb_000029_350 Hb_000826_070 Hb_000826_070 Hb_000029_350--Hb_000826_070 Hb_001789_040 Hb_001789_040 Hb_000029_350--Hb_001789_040 Hb_179154_020 Hb_179154_020 Hb_000029_350--Hb_179154_020 Hb_002600_060 Hb_002600_060 Hb_000029_350--Hb_002600_060 Hb_000568_050 Hb_000568_050 Hb_000029_350--Hb_000568_050 Hb_001244_150 Hb_001244_150 Hb_000029_350--Hb_001244_150 Hb_001999_140 Hb_001999_140 Hb_000826_070--Hb_001999_140 Hb_013459_020 Hb_013459_020 Hb_000826_070--Hb_013459_020 Hb_000664_120 Hb_000664_120 Hb_000826_070--Hb_000664_120 Hb_005211_020 Hb_005211_020 Hb_000826_070--Hb_005211_020 Hb_000826_070--Hb_000568_050 Hb_012055_110 Hb_012055_110 Hb_000826_070--Hb_012055_110 Hb_000608_300 Hb_000608_300 Hb_001789_040--Hb_000608_300 Hb_005402_040 Hb_005402_040 Hb_001789_040--Hb_005402_040 Hb_004306_030 Hb_004306_030 Hb_001789_040--Hb_004306_030 Hb_027472_220 Hb_027472_220 Hb_001789_040--Hb_027472_220 Hb_000025_710 Hb_000025_710 Hb_001789_040--Hb_000025_710 Hb_002631_140 Hb_002631_140 Hb_001789_040--Hb_002631_140 Hb_001959_270 Hb_001959_270 Hb_179154_020--Hb_001959_270 Hb_007818_040 Hb_007818_040 Hb_179154_020--Hb_007818_040 Hb_000377_050 Hb_000377_050 Hb_179154_020--Hb_000377_050 Hb_007305_020 Hb_007305_020 Hb_179154_020--Hb_007305_020 Hb_007576_230 Hb_007576_230 Hb_179154_020--Hb_007576_230 Hb_002571_030 Hb_002571_030 Hb_179154_020--Hb_002571_030 Hb_000331_560 Hb_000331_560 Hb_002600_060--Hb_000331_560 Hb_000925_090 Hb_000925_090 Hb_002600_060--Hb_000925_090 Hb_002600_060--Hb_005211_020 Hb_001133_030 Hb_001133_030 Hb_002600_060--Hb_001133_030 Hb_005488_170 Hb_005488_170 Hb_002600_060--Hb_005488_170 Hb_000083_070 Hb_000083_070 Hb_002600_060--Hb_000083_070 Hb_011174_020 Hb_011174_020 Hb_000568_050--Hb_011174_020 Hb_000568_050--Hb_012055_110 Hb_006663_060 Hb_006663_060 Hb_000568_050--Hb_006663_060 Hb_000011_270 Hb_000011_270 Hb_000568_050--Hb_000011_270 Hb_000568_050--Hb_000608_300 Hb_000573_060 Hb_000573_060 Hb_001244_150--Hb_000573_060 Hb_002641_130 Hb_002641_130 Hb_001244_150--Hb_002641_130 Hb_002233_130 Hb_002233_130 Hb_001244_150--Hb_002233_130 Hb_004324_330 Hb_004324_330 Hb_001244_150--Hb_004324_330 Hb_002350_010 Hb_002350_010 Hb_001244_150--Hb_002350_010 Hb_001244_150--Hb_000608_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.5387 27.0011 19.9748 14.7318 21.3283 16.0556
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.6086 6.67084 7.50076 20.9895 34.9052

CAGE analysis