Hb_176368_010

Information

Type -
Description -
Location Contig176368: 3-634
Sequence    

Annotation

kegg
ID pop:POPTR_0019s00300g
description POPTRDRAFT_836008; hypothetical protein
nr
ID XP_002325709.2
description hypothetical protein POPTR_0019s00300g [Populus trichocarpa]
swissprot
ID Q9LDX1
description Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1
trembl
ID B9INZ5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s00300g PE=4 SV=2
Gene Ontology
ID GO:0005783
description protein suppressor of gene silencing 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16905: 52-548
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_176368_010 0.0 - - hypothetical protein POPTR_0019s00300g [Populus trichocarpa]
2 Hb_000859_050 0.1565682908 - - hypothetical protein JCGZ_17054 [Jatropha curcas]
3 Hb_008103_080 0.1622695008 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
4 Hb_000445_300 0.1709385052 - - PREDICTED: wall-associated receptor kinase 5-like [Eucalyptus grandis]
5 Hb_000327_080 0.1715768172 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
6 Hb_003739_030 0.1723801577 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
7 Hb_000922_140 0.1734324581 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
8 Hb_001452_220 0.1772286273 - - PREDICTED: molybdopterin biosynthesis protein CNX1 [Jatropha curcas]
9 Hb_004884_010 0.1777656846 - - PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Jatropha curcas]
10 Hb_004195_060 0.178041349 - - PREDICTED: uncharacterized protein LOC105803780 isoform X1 [Gossypium raimondii]
11 Hb_001655_060 0.1802747415 - - PREDICTED: RNA-binding protein 28 [Jatropha curcas]
12 Hb_012528_030 0.1829772299 - - -
13 Hb_002188_090 0.1850105847 - - PREDICTED: pre-mRNA-processing protein 40A isoform X1 [Jatropha curcas]
14 Hb_000317_060 0.1850237807 - - PREDICTED: uncharacterized protein LOC105647051 [Jatropha curcas]
15 Hb_014497_090 0.1854108151 - - hypothetical protein PHAVU_002G037900g [Phaseolus vulgaris]
16 Hb_034350_020 0.1854327849 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
17 Hb_000963_130 0.1875952799 - - RNA m5u methyltransferase, putative [Ricinus communis]
18 Hb_011512_060 0.1885319252 - - PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
19 Hb_010710_080 0.1896300224 - - -
20 Hb_000317_150 0.1903546862 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_176368_010 Hb_176368_010 Hb_000859_050 Hb_000859_050 Hb_176368_010--Hb_000859_050 Hb_008103_080 Hb_008103_080 Hb_176368_010--Hb_008103_080 Hb_000445_300 Hb_000445_300 Hb_176368_010--Hb_000445_300 Hb_000327_080 Hb_000327_080 Hb_176368_010--Hb_000327_080 Hb_003739_030 Hb_003739_030 Hb_176368_010--Hb_003739_030 Hb_000922_140 Hb_000922_140 Hb_176368_010--Hb_000922_140 Hb_000859_050--Hb_008103_080 Hb_005333_160 Hb_005333_160 Hb_000859_050--Hb_005333_160 Hb_001511_170 Hb_001511_170 Hb_000859_050--Hb_001511_170 Hb_000859_050--Hb_003739_030 Hb_000859_050--Hb_000922_140 Hb_171900_070 Hb_171900_070 Hb_000859_050--Hb_171900_070 Hb_000917_320 Hb_000917_320 Hb_008103_080--Hb_000917_320 Hb_008103_080--Hb_000922_140 Hb_000963_130 Hb_000963_130 Hb_008103_080--Hb_000963_130 Hb_005332_020 Hb_005332_020 Hb_008103_080--Hb_005332_020 Hb_004079_120 Hb_004079_120 Hb_008103_080--Hb_004079_120 Hb_039894_010 Hb_039894_010 Hb_000445_300--Hb_039894_010 Hb_001529_060 Hb_001529_060 Hb_000445_300--Hb_001529_060 Hb_000504_090 Hb_000504_090 Hb_000445_300--Hb_000504_090 Hb_001009_290 Hb_001009_290 Hb_000445_300--Hb_001009_290 Hb_001522_010 Hb_001522_010 Hb_000445_300--Hb_001522_010 Hb_005214_150 Hb_005214_150 Hb_000327_080--Hb_005214_150 Hb_009449_090 Hb_009449_090 Hb_000327_080--Hb_009449_090 Hb_007818_040 Hb_007818_040 Hb_000327_080--Hb_007818_040 Hb_011671_230 Hb_011671_230 Hb_000327_080--Hb_011671_230 Hb_002571_030 Hb_002571_030 Hb_000327_080--Hb_002571_030 Hb_007576_220 Hb_007576_220 Hb_000327_080--Hb_007576_220 Hb_000261_030 Hb_000261_030 Hb_003739_030--Hb_000261_030 Hb_000010_360 Hb_000010_360 Hb_003739_030--Hb_000010_360 Hb_009771_110 Hb_009771_110 Hb_003739_030--Hb_009771_110 Hb_001452_220 Hb_001452_220 Hb_003739_030--Hb_001452_220 Hb_002784_010 Hb_002784_010 Hb_003739_030--Hb_002784_010 Hb_148909_030 Hb_148909_030 Hb_003739_030--Hb_148909_030 Hb_001953_150 Hb_001953_150 Hb_000922_140--Hb_001953_150 Hb_000922_140--Hb_005332_020 Hb_006658_040 Hb_006658_040 Hb_000922_140--Hb_006658_040 Hb_004429_160 Hb_004429_160 Hb_000922_140--Hb_004429_160 Hb_001427_190 Hb_001427_190 Hb_000922_140--Hb_001427_190 Hb_001307_080 Hb_001307_080 Hb_000922_140--Hb_001307_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.66662 1.68335 0.991535 0.158577 2.54122 1.27009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.433972 0.340905 0.381326 2.23027 1.89205

CAGE analysis